YRC Public Data Repository - Protein Structure Prediction

Protein:	RPAC2_MOUSE
Organism:	Mus musculus
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPAC2_MOUSE.

Description	E-value	Query Range	Subject Range
POLR1D - polymerase (RNA) I polypeptide D, 16kDa ENSPTRT00000060269 - null gi\|208968663 - gi\|208968663\|dbj\|BAG74170.1\| polymerase (RNA) I polypeptide D, 16kDa [synthetic construct]	154.0	[0..1]	[133..1]
gi\|109121411 - gi\|109121411\|ref\|XP_001110871.1\| PREDICTED: polymerase (RNA) I polypeptide D, 16kDa [Macaca mulatta]	154.0	[0..1]	[133..1]
RPAC2_BOVIN - DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1	152.0	[0..1]	[133..1]
gi\|73957788 - gi\|73957788\|ref\|XP_546937.2\| PREDICTED: similar to RAS p21 protein activator 4 [Canis familiaris]	146.0	[0..14]	[124..999]
gi\|67540776, gi\|... - gi\|67540776\|ref\|XP_664162.1\| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	142.0	[0..2]	[131..8]
gi\|46097891, gi\|... - gi\|71011575\|ref\|XP_758471.1\| hypothetical protein UM02324.1 [Ustilago maydis 521], ref\|XP_399939.1\| ...	134.0	[0..14]	[124..9]
gi\|46431930, gi\|... - gi\|68491001\|ref\|XP_710695.1\| potential RNA Polymerase I and III shared subunit Rpc19 [Candida albica... orf19.7805, orf1... - orf19.172 CGDID:CAL0003206 Assembly 19, Contig19-10040 (16828, 16433) CDS, reverse complemented, tra...	131.0	[0..2]	[131..4]
gi\|114615159 - gi\|114615159\|ref\|XP_527849.2\| PREDICTED: similar to RAS p21 protein activator 4, partial [Pan troglo...	131.0	[0..25]	[124..164]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDDQELERK ISGLKTSMAE GERKTALEMV QAAGTDRQCV TFVLHEEDHT LGNCLRYIIM  60
   61 KNPEVEFCGY TTTHPSESKI NLRIQTRGAL PAVEPFQKGL NELLNVCQHV LVKFEASIKD 120
  121 YKAKKASKKE PTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1i3qK
Description:	RPB11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits