YRC Public Data Repository - Protein Structure Prediction

Protein:	RT23_MOUSE
Organism:	Mus musculus
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT23_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74212121 - gi\|74212121\|dbj\|BAE40223.1\| unnamed protein product [Mus musculus]	310.0	[0..1]	[177..1]
gi\|114669508 - gi\|114669508\|ref\|XP_511903.2\| PREDICTED: mitochondrial ribosomal protein S23 [Pan troglodytes]	293.0	[0..1]	[177..1]
MRPS23 - mitochondrial ribosomal protein S23	293.0	[0..1]	[177..1]
gi\|109491616, gi... - ref\|XP_340875.1\| similar to Mrps23 protein [Rattus norvegicus], gi\|109491616\|ref\|XP_001081199.1\| PRE...	291.0	[0..1]	[177..1]
gi\|109114474 - gi\|109114474\|ref\|XP_001105899.1\| PREDICTED: similar to mitochondrial ribosomal protein S23 [Macaca m...	282.0	[0..1]	[177..1]
gi\|73966669 - gi\|73966669\|ref\|XP_852355.1\| PREDICTED: similar to mitochondrial ribosomal protein S23 [Canis famili...	271.0	[0..1]	[177..191]
RT23_BOVIN - 28S ribosomal protein S23, mitochondrial OS=Bos taurus GN=MRPS23 PE=1 SV=1	262.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSRLETVG SVFSRTRDLM RAGVLKEKPL WYDIYKAFPP LREPVFRRPR LRYGKAKADI  60
   61 QDIFYQEDQI RAKFFATYGS GQKAFDLFNP NFKSTCQRFV EKYTELQNLG ETDEEKLFVE 120
  121 TGKALLAEGI ILRRVREART VSVRLQASSE GHEPQEDDDL AQRGQVKQEP ETAPSPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits