YRC Public Data Repository - Protein Structure Prediction

Protein:	AT1B2_MOUSE
Organism:	Mus musculus
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT1B2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|91127 - gi\|91127\|pir\|\|A34057 Na+/K+-exchanging ATPase (EC 3.6.3.9) beta-2 chain - mouse	474.0	[0..1]	[290..1]
AT1B2_OCHCU - Sodium/potassium-transporting ATPase subunit beta-2 OS=Ochotona curzoniae GN=ATP1B2 PE=2 SV=1 CCDS32550.1_1 - null	472.0	[0..1]	[290..1]
gi\|22094878 - gi\|22094878\|gb\|AAM92016.1\| Na/K-ATPase beta 2 subunit [synthetic construct]	472.0	[0..1]	[290..1]
AT1B2_RABIT - Sodium/potassium-transporting ATPase subunit beta-2 OS=Oryctolagus cuniculus GN=ATP1B2 PE=2 SV=1	471.0	[0..1]	[290..1]
gi\|73955592 - gi\|73955592\|ref\|XP_546597.2\| PREDICTED: similar to Na+/K+ -ATPase beta 2 subunit [Canis familiaris]	471.0	[0..1]	[290..1]
ATP1B2 - ATPase, Na+/K+ transporting, beta 2 polypeptide gi\|114666229 - gi\|114666229\|ref\|XP_001171996.1\| PREDICTED: Na+/K+ -ATPase beta 2 subunit isoform 2 [Pan troglodytes...	471.0	[0..1]	[290..1]
gi\|56540872, gi\|... - gi\|56799390\|ref\|NP_036639.2\| Na+/K+ -ATPase beta 2 subunit [Rattus norvegicus], gi\|56540872\|gb\|AAH87...	470.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIQKEKKSC GQVVEEWKEF VWNPRTHQFM GRTGTSWAFI LLFYLVFYGF LTAMFSLTMW  60
   61 VMLQTV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDHTPKYQDR LATPGLMIRP KTENLDVIVN ISDTESWGQH VQKLNKFLEP YN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [119-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSIQAQKNDV CRPGRYYEQP DNGVLNYPKR ACQFNRTQLG DCSGIGDPTH YGYSTGQPCV  60
   61 FIKMNRVINF YAGANQSMNV TCVGKRDEDA ENLGHFVMFP ANGSIDLMYF PYYGKKFHVN 120
  121 YTQPLVAVKF LNVTPNVEVN VECRINAANI ATDDERDKFA GRVAFKLRIN KT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits