YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616443, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616443, gi....

Description	E-value	Query Range	Subject Range
gi\|81242387, gi\|... - gi\|82778239\|ref\|YP_404588.1\| hydrogenase 2-specific chaperone [Shigella dysenteriae Sd197], gi\|81242...	243.0	[0..1]	[162..1]
EG11803 - hydrogenase 2-specific chaperone / Hydrogenase 2-specific chaperone HYBE_ECOL6 - Hydrogenase-2 operon protein hybE OS=Escherichia coli O6 GN=hybE PE=3 SV=1 HYBE_ECOL6 - Hydrogenase-2 operon protein HybE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... EG11803 - hydrogenase 2-specific chaperone / Hydrogenase 2-specific chaperone gi\|85675800, gi\|... - gi\|89109767\|ref\|AP_003547.1\| hydrogenase 2-specific chaperone [Escherichia coli str. K-12 substr. W3... gi\|74313537, gi\|... - gi\|74313537\|ref\|YP_311956.1\| hydrogenase 2-specific chaperone [Shigella sonnei Ss046], gi\|73857014\|g... gi\|124502192, gi... - gi\|124526088\|ref\|ZP_01698093.1\| HybE [Escherichia coli B], gi\|124502192\|gb\|EAY49652.1\| HybE [Escheri... gi\|82545270, gi\|... - gi\|82545270\|ref\|YP_409217.1\| hydrogenase 2-specific chaperone [Shigella boydii Sb227], gi\|81246681\|g... gi\|170018749, gi... - gi\|170018749\|ref\|YP_001723703.1\| hydrogenase 2-specific chaperone [Escherichia coli ATCC 8739], gi\|1... gi\|75187815, gi\|... - gi\|75187815\|ref\|ZP_00701082.1\| hypothetical protein EcolE_01001056 [Escherichia coli E24377A], gi\|15... gi\|194415765, gi... - gi\|75212362\|ref\|ZP_00712386.1\| hypothetical protein EcolB_01000445 [Escherichia coli B171], gi\|19442... gi\|83587561, gi\|... - gi\|83587561\|ref\|ZP_00926188.1\| hypothetical protein Ecol1_01001091 [Escherichia coli 101-1], gi\|1944... gi\|187427237, gi... - gi\|75178891\|ref\|ZP_00698927.1\| hypothetical protein SboyB_01001283 [Shigella boydii BS512], gi\|18773... gi\|75259938, gi\|... - gi\|75259938\|ref\|ZP_00731216.1\| hypothetical protein EcolE2_01000336 [Escherichia coli E22], gi\|19306... gi\|75515210, gi\|... - gi\|75515210\|ref\|ZP_00737394.1\| hypothetical protein Ecol5_01000791 [Escherichia coli 53638], gi\|1884... gi\|75229321, gi\|... - gi\|75229321\|ref\|ZP_00715880.1\| hypothetical protein EcolB7_01002468 [Escherichia coli B7A], gi\|19116... gi\|192959223, gi... - gi\|75239424\|ref\|ZP_00723395.1\| hypothetical protein EcolE1_01000497 [Escherichia coli E110019], gi\|1... HYBE_ECOLI - Hydrogenase-2 operon protein hybE - Escherichia coli gi\|238902110, gi... - gi\|238902110\|ref\|YP_002927906.1\| hydrogenase 2-specific chaperone [Escherichia coli BW2952], gi\|2388... gi\|251786275, gi... - gi\|251786275\|ref\|YP_003000579.1\| hypothetical protein B21_02817 [Escherichia coli BL21], gi\|24237854... gi\|253979002, gi... - gi\|254289695\|ref\|YP_003055443.1\| hydrogenase 2-specific chaperone [Escherichia coli BL21(DE3)], gi\|2... gi\|209913727, gi... - gi\|209920468\|ref\|YP_002294552.1\| hydrogenase 2-specific chaperone [Escherichia coli SE11], gi\|209913... gi\|254038161, gi... - gi\|254038161\|ref\|ZP_04872219.1\| hydrogenase-2 operon protein HybE [Escherichia sp. 1_1_43], gi\|22683... gi\|169890375, gi... - gi\|170082540\|ref\|YP_001731860.1\| hydrogenase 2-specific chaperone [Escherichia coli str. K-12 substr... gi\|254162946, gi... - gi\|254162946\|ref\|YP_003046054.1\| hydrogenase 2-specific chaperone [Escherichia coli B str. REL606], ... gi\|218706619, gi... - gi\|218706619\|ref\|YP_002414138.1\| hydrogenase 2-specific chaperone [Escherichia coli UMN026], gi\|2184... gi\|218353434, gi... - gi\|218696702\|ref\|YP_002404369.1\| hydrogenase 2-specific chaperone [Escherichia coli 55989], gi\|21835...	243.0	[0..1]	[162..1]
gi\|157068152, gi... - gi\|75196956\|ref\|ZP_00707026.1\| hypothetical protein EcolH_01002768 [Escherichia coli HS], gi\|1571624...	242.0	[0..1]	[162..1]
gi\|544487 - gi\|544487\|gb\|AAA21593.1\| hybE	241.0	[0..1]	[162..1]
gi\|190907246, gi... - gi\|75240552\|ref\|ZP_00724480.1\| hypothetical protein EcolF_01002478 [Escherichia coli F11], gi\|191172... gi\|226899301, gi... - gi\|237706261\|ref\|ZP_04536742.1\| hydrogenase-2 operon protein HybE [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91212406, gi\|... - gi\|91212406\|ref\|YP_542392.1\| hydrogenase 2-specific chaperone [Escherichia coli UTI89], gi\|91073980\|... gi\|115514421, gi... - gi\|117625297\|ref\|YP_854469.1\| hydrogenase 2-specific chaperone [Escherichia coli APEC O1], gi\|115514... gi\|218366836, gi... - gi\|218560067\|ref\|YP_002392980.1\| hydrogenase 2-specific chaperone [Escherichia coli S88], gi\|2183668...	241.0	[0..1]	[162..1]
gi\|168753956, gi... - gi\|189358611\|gb\|EDU77030.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4401]... gi\|168747503, gi... - gi\|188017836\|gb\|EDU55958.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4113]... gi\|168781863, gi... - gi\|189000606\|gb\|EDU69592.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4076]... gi\|15833131, gi\|... - gi\|15833131\|ref\|NP_311904.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. Sakai],... gi\|168773356, gi... - gi\|187770912\|gb\|EDU34756.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4196]... gi\|189363801, gi... - gi\|189363801\|gb\|EDU82220.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4486]... gi\|168760147, gi... - gi\|189369228\|gb\|EDU87644.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4501]... gi\|254594349, gi... - gi\|254794949\|ref\|YP_003079786.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. TW1... HYBE_ECO57 - Hydrogenase-2 operon protein HybE OS=Escherichia coli O157:H7 GN=hybE PE=3 SV=1 gi\|208727487, gi... - gi\|208807686\|ref\|ZP_03250023.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4... gi\|195937138 - gi\|195937138\|ref\|ZP_03082520.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 str. EC40... gi\|12517556, gi\|... - gi\|15803537\|ref\|NP_289570.1\| hydrogenase 2-specific chaperone [Escherichia coli O157:H7 EDL933], gi\|... gi\|189379799, gi... - gi\|189379799\|gb\|EDU98215.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC508],... gi\|25391406, gi\|... - pir\|\|E85958 member of hyb operon [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|189374124, gi... - gi\|189374124\|gb\|EDU92540.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC869],... gi\|217319458, gi... - gi\|217327091\|ref\|ZP_03443174.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. TW1... gi\|209157699, gi... - gi\|209396299\|ref\|YP_002272471.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC... gi\|208821024, gi... - gi\|208821024\|ref\|ZP_03261344.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4... gi\|208814480, gi... - gi\|208814480\|ref\|ZP_03255809.1\| hydrogenase-2 operon protein HybE [Escherichia coli O157:H7 str. EC4...	238.0	[0..1]	[162..1]
gi\|110643232, gi... - gi\|110643232\|ref\|YP_670962.1\| hydrogenase 2-specific chaperone [Escherichia coli 536], gi\|110344824\|...	237.0	[0..1]	[162..1]
gi\|238909945 - gi\|238909945\|ref\|ZP_04653782.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|62129289, gi\|... - gi\|62181656\|ref\|YP_218073.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|56129343, gi\|... - gi\|56415086\|ref\|YP_152161.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|29139044, gi\|... - gi\|29143410\|ref\|NP_806752.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|194470151, gi... - gi\|194470151\|ref\|ZP_03076135.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|16761923 - gi\|16761923\|ref\|NP_457540.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enterica s... gi\|205343379, gi... - gi\|205343379\|gb\|EDZ30143.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|168463654, gi... - gi\|195633299\|gb\|EDX51713.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|25513400, gi\|... - gi\|25513400\|pir\|\|AI0884 hydrogenase-2 component protein [imported] - Salmonella enterica subsp. ente... gi\|197288967, gi... - gi\|197288967\|gb\|EDY28338.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|204322329, gi... - gi\|204928007\|ref\|ZP_03219207.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|197095492, gi... - gi\|197364015\|ref\|YP_002143652.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteri... gi\|197215257, gi... - gi\|197251554\|ref\|YP_002148066.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|194711127, gi... - gi\|194735625\|ref\|YP_002116100.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|205333804, gi... - gi\|205333804\|gb\|EDZ20568.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|205323344, gi... - gi\|205323344\|gb\|EDZ11183.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser... gi\|161365489, gi... - gi\|161616125\|ref\|YP_001590090.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteri... gi\|213621375 - gi\|213621375\|ref\|ZP_03374158.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213424817 - gi\|213424817\|ref\|ZP_03357567.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213418351 - gi\|213418351\|ref\|ZP_03351417.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213161311 - gi\|213161311\|ref\|ZP_03347021.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|224584941, gi... - gi\|224584941\|ref\|YP_002638740.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|214000553 - gi\|214000553\|ref\|ZP_03411288.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213854527 - gi\|213854527\|ref\|ZP_03382767.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric... gi\|213648650 - gi\|213648650\|ref\|ZP_03378703.1\| hydrogenase 2-specific chaperone [Salmonella enterica subsp. enteric...	234.0	[0..1]	[162..1]
gi\|16421699, gi\|... - gi\|16766445\|ref\|NP_462060.1\| hydrogenase 2-specific chaperone [Salmonella typhimurium LT2], gi\|16421... lcl\|NC_016856.1_... - [gene=hybE] [protein=hydrogenase 2-specific chaperone] [protein_id=YP_005239308.1] [location=complem... gi\|194402589, gi... - gi\|194443926\|ref\|YP_002042409.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enteric... gi\|200386813, gi... - gi\|200386813\|ref\|ZP_03213425.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica... gi\|205331269, gi... - gi\|205331269\|gb\|EDZ18033.1\| hydrogenase-2 component protein [Salmonella enterica subsp. enterica ser...	231.0	[0..1]	[162..1]
HUPJ_RHOCA - Probable rubredoxin HupJ OS=Rhodobacter capsulatus GN=hupJ PE=3 SV=2	203.0	[0..8]	[151..87]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEEIAGFQT SPKAQVQAAF EEIARRSMHD LSFLHPSMPV YVSDFTLFEG QWTGCVITPW  60
   61 MLSAVIFPGP DQLWPLRKVS EKIGLQLPYG TMTFTVGELD GVSQYLSCSL MSPLSHSMSI 120
  121 EEGQRLTDDC ARMILSLPVT NPDVPHAGRR ALLFGRRRGE NA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits