YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIT_SHIF8
Organism:	Shigella flexneri 5 str. 8401
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIT_SHIF8.

Description	E-value	Query Range	Subject Range
FLIT_ECOHS - Flagellar protein FliT OS=Escherichia coli O9:H4 (strain HS) GN=fliT PE=3 SV=1 FLIT_ECO7I - Flagellar protein FliT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fliT PE=3 SV=1	146.0	[0..1]	[121..1]
FLIT_SHISS - Flagellar protein FliT OS=Shigella sonnei (strain Ss046) GN=fliT PE=3 SV=1	146.0	[0..1]	[121..1]
gi\|89108761, gi\|... - gi\|89108761\|ref\|AP_002541.1\| predicted chaperone [Escherichia coli str. K-12 substr. W3110], gi\|1736... gi\|13362133, gi\|... - gi\|15831919\|ref\|NP_310692.1\| flagellar biosynthesis protein FliT [Escherichia coli O157:H7 str. Saka... FLIT_ECO57 - Flagellar protein FliT OS=Escherichia coli O157:H7 GN=fliT PE=3 SV=1 EG11389 - putative flagellar synthesis and assembly chaperone / Flagellar synthesis, predicted chaperone, role... gi\|12516027, gi\|... - gi\|15802361\|ref\|NP_288387.1\| flagellar biosynthesis protein FliT [Escherichia coli O157:H7 EDL933], ... EG11389 - putative flagellar synthesis and assembly chaperone / Flagellar synthesis, predicted chaperone, role... FLIT_ECODH - Flagellar protein FliT OS=Escherichia coli (strain K12 / DH10B) GN=fliT PE=3 SV=1 gi\|168751853, gi... - gi\|188014171\|gb\|EDU52293.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4113], gi\|168751... gi\|189354923, gi... - gi\|189354923\|gb\|EDU73342.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4401], gi\|168758... FLIT_ECOLI - Flagellar protein fliT - Escherichia coli FLIT_ECOBW - Flagellar protein FliT OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fliT PE=3 SV=1 gi\|253324165, gi... - gi\|253773121\|ref\|YP_003035952.1\| flagellar export chaperone [Escherichia coli BL21(DE3)], gi\|2533241... gi\|254793577, gi... - gi\|254793577\|ref\|YP_003078414.1\| predicted chaperone [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|208731089, gi... - gi\|208816746\|ref\|ZP_03257866.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208738422, gi... - gi\|208818299\|ref\|ZP_03258619.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4042], gi\|20... FLIT_ECO5E - Flagellar protein FliT OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fliT PE=3 SV=1 gi\|217317943, gi... - gi\|217328596\|ref\|ZP_03444677.1\| flagellar protein FliT [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|189370201, gi... - gi\|189370201\|gb\|EDU88617.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC869], gi\|1687903... gi\|189375700, gi... - gi\|189375700\|gb\|EDU94116.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC508], gi\|1688022... gi\|195939231 - gi\|195939231\|ref\|ZP_03084613.1\| flagellar biosynthesis protein FliT [Escherichia coli O157:H7 str. E... gi\|208810272, gi... - gi\|208810272\|ref\|ZP_03252148.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|189365551, gi... - gi\|189365551\|gb\|EDU83967.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4501], gi\|168764... gi\|189359717, gi... - gi\|189359717\|gb\|EDU78136.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4486], gi\|168771... gi\|187767396, gi... - gi\|187767396\|gb\|EDU31240.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4196], gi\|168777... gi\|188999327, gi... - gi\|188999327\|gb\|EDU68313.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4076], gi\|168783...	146.0	[0..1]	[121..1]
gi\|193071136, gi... - gi\|75233948\|ref\|ZP_00718401.1\| hypothetical protein EcolE1_01004070 [Escherichia coli E110019], gi\|1...	144.0	[0..1]	[121..1]
FLIT_ECO24 - Flagellar protein FliT OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fliT PE=3 SV=1	144.0	[0..1]	[121..1]
FLIT_ECOL5 - Flagellar protein FliT OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fliT PE=3 SV=1 gi\|191173278, gi... - gi\|75239176\|ref\|ZP_00723153.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli F11]...	144.0	[0..1]	[121..1]
FLIT_ECO8A - Flagellar protein FliT OS=Escherichia coli O8 (strain IAI1) GN=fliT PE=3 SV=1 gi\|75255525, gi\|... - gi\|75255525\|ref\|ZP_00727317.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli E22]... gi\|194429947, gi... - gi\|75208826\|ref\|ZP_00709110.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli B171... gi\|194439568, gi... - gi\|83585036\|ref\|ZP_00923690.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli 101-...	143.0	[0..1]	[120..1]
gi\|75228514, gi\|... - gi\|75228514\|ref\|ZP_00715151.1\| COG0419: ATPase involved in DNA repair [Escherichia coli B7A], gi\|191... gi\|209919348, gi... - gi\|209919348\|ref\|YP_002293432.1\| flagellar biosynthesis protein FliT [Escherichia coli SE11], gi\|209...	143.0	[0..1]	[121..1]
gi\|75511452, gi\|... - gi\|75511452\|ref\|ZP_00734127.1\| hypothetical protein Ecol5_01004270 [Escherichia coli 53638], gi\|1884...	142.0	[0..1]	[121..1]
FLIT_SALCH - Flagellar protein FliT OS=Salmonella choleraesuis GN=fliT PE=3 SV=1 FLIT_SALTI - Flagellar protein fliT OS=Salmonella typhi GN=fliT PE=3 SV=1 FLIT_SALTI - Flagellar protein FliT OS=Salmonella typhi GN=fliT PE=3 SV=1 FLIT_SALTY - Flagellar protein FliT OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliT PE=1 ... gi\|29141402, gi\|... - gi\|29141402\|ref\|NP_804744.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. enteric... gi\|16760906 - gi\|16760906\|ref\|NP_456523.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. enteric... gi\|168823004, gi... - gi\|205340672\|gb\|EDZ27436.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Welt... FLIT_SALNS - Flagellar protein FliT OS=Salmonella newport (strain SL254) GN=fliT PE=3 SV=1 FLIT_SALHS - Flagellar protein FliT OS=Salmonella heidelberg (strain SL476) GN=fliT PE=3 SV=1 gi\|194470970, gi... - gi\|194470970\|ref\|ZP_03076954.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... gi\|168239200, gi... - gi\|197288042\|gb\|EDY27429.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Schw... gi\|205336348, gi... - gi\|205336348\|gb\|EDZ23112.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Heid... gi\|168259752, gi... - gi\|205351182\|gb\|EDZ37813.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Hada... gi\|168462498, gi... - gi\|195634448\|gb\|EDX52800.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Newp... gi\|205322658, gi... - gi\|205322658\|gb\|EDZ10497.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Sain... gi\|167993535, gi... - gi\|205328385\|gb\|EDZ15149.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar 4,[5... gi\|168234134, gi... - gi\|205331871\|gb\|EDZ18635.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar Kent... FLIT_SALTY - Flagellar protein FliT OS=Salmonella typhimurium GN=fliT PE=1 SV=1 gi\|214001881 - gi\|214001881\|ref\|ZP_03412616.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... FLIT_SALPC - Flagellar protein FliT OS=Salmonella paratyphi C (strain RKS4594) GN=fliT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=fliT] [protein=flagellar biosynthesis protein FliT] [protein_id=YP_005237931.1] [location=2062... gi\|213426348 - gi\|213426348\|ref\|ZP_03359098.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|213580923 - gi\|213580923\|ref\|ZP_03362749.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... FLIT_SALTY - Flagellar protein fliT OS=Salmonella typhimurium GN=fliT PE=1 SV=1 gi\|213649071 - gi\|213649071\|ref\|ZP_03379124.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|213855239 - gi\|213855239\|ref\|ZP_03383479.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|200390087, gi... - gi\|200390087\|ref\|ZP_03216698.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... gi\|238912465 - gi\|238912465\|ref\|ZP_04656302.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... gi\|204930988, gi... - gi\|204930988\|ref\|ZP_03221814.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... FLIT_SALEP - Flagellar protein FliT OS=Salmonella enteritidis PT4 (strain P125109) GN=fliT PE=3 SV=1 gi\|213053503 - gi\|213053503\|ref\|ZP_03346381.1\| flagellar biosynthesis protein FliT [Salmonella enterica subsp. ente... FLIT_SALPB - Flagellar protein FliT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fliT PE=3 SV=1 FLIT_SALPB - Flagellar protein fliT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fliT PE=3 SV=1 FLIT_SALSV - Flagellar protein FliT OS=Salmonella schwarzengrund (strain CVM19633) GN=fliT PE=3 SV=1 FLIT_SALA4 - Flagellar protein FliT OS=Salmonella agona (strain SL483) GN=fliT PE=3 SV=1 FLIT_SALCH - Flagellar protein fliT OS=Salmonella choleraesuis GN=fliT PE=3 SV=1 gi\|197265861, gi... - gi\|197265861\|ref\|ZP_03165935.1\| flagellar protein FliT [Salmonella enterica subsp. enterica serovar ... FLIT_SALDC - Flagellar protein FliT OS=Salmonella dublin (strain CT_02021853) GN=fliT PE=3 SV=1 FLIT_SALCH - Flagellar protein FliT OS=Salmonella choleraesuis (strain SC-B67) GN=fliT PE=3 SV=1	132.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNAPHLYFA WQQLVEKSQL MLRLATEEQW DELIASEMAY VNAVQEIAHL TEEVAPSTTM  60
   61 QEQLRPMLHL ILDNESKVKQ LLQIRMDELA KLVGQSSVQK SVLSAYGDQG GFVLAPQDNL 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.124939
Match:	PF05400.4
Description:	No description for PF05400.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits