YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110614781, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110614781, gi....

Description	E-value	Query Range	Subject Range
gi\|208807729, gi... - gi\|208807729\|ref\|ZP_03250066.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escheric... gi\|208814890, gi... - gi\|208814890\|ref\|ZP_03256069.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escheric... gi\|208737510, gi... - gi\|208822025\|ref\|ZP_03262344.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escheric... gi\|209159303, gi... - gi\|209397903\|ref\|YP_002270161.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escheri... gi\|217328015, gi... - gi\|217328015\|ref\|ZP_03444097.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escheric... gi\|218558157, gi... - gi\|218558157\|ref\|YP_002391070.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|218689175, gi... - gi\|218689175\|ref\|YP_002397387.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|191171054, gi... - gi\|75242031\|ref\|ZP_00725825.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli F11], gi\|1... gi\|189365606, gi... - gi\|189365606\|gb\|EDU84022.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... gi\|189360041, gi... - gi\|189360041\|gb\|EDU78460.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... gi\|168776879, gi... - gi\|187767811\|gb\|EDU31655.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... gi\|189000017, gi... - gi\|189000017\|gb\|EDU69003.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... NARJ_ECO57 - Nitrate reductase molybdenum cofactor assembly chaperone NarJ OS=Escherichia coli O157:H7 GN=narJ PE... gi\|189372500, gi... - gi\|189372500\|gb\|EDU90916.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... EG10641 - molybdenum-cofactor-assembly chaperone delta subunit of nitrate reductase 1 / Redox enzyme maturatio... gi\|117623444, gi... - gi\|117623444\|ref\|YP_852357.1\| nitrate reductase 1 delta subunit [Escherichia coli APEC O1], gi\|11551... gi\|189376305, gi... - gi\|189376305\|gb\|EDU94721.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... gi\|170080857, gi... - gi\|170080857\|ref\|YP_001730177.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|195939116 - gi\|195939116\|ref\|ZP_03084498.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of ni... NARJ_ECOLI - Respiratory nitrate reductase 1 delta chain (EC 1.7.99.4) - Escherichia coli gi\|1651622, gi\|8... - gi\|89108074\|ref\|AP_001854.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitra... gi\|91210450, gi\|... - gi\|91210450\|ref\|YP_540436.1\| nitrate reductase 1 delta subunit [Escherichia coli UTI89], gi\|91072024... gi\|13361196, gi\|... - gi\|15830985\|ref\|NP_309758.1\| nitrate reductase 1 delta subunit [Escherichia coli O157:H7 str. Sakai]... gi\|110641458, gi... - gi\|110641458\|ref\|YP_669188.1\| respiratory nitrate reductase 1 delta chain [Escherichia coli 536], gi... EG10641 - molybdenum-cofactor-assembly chaperone delta subunit of nitrate reductase 1 / Redox enzyme maturatio... gi\|188015095, gi... - gi\|188015095\|gb\|EDU53217.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... gi\|254792699, gi... - gi\|254792699\|ref\|YP_003077536.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|168758154, gi... - gi\|189354992\|gb\|EDU73411.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Escherichia ... gi\|238861797, gi... - gi\|238900460\|ref\|YP_002926256.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|237705192, gi... - gi\|237705192\|ref\|ZP_04535673.1\| nitrate reductase 1 delta subunit [Escherichia sp. 3_2_53FAA], gi\|22...	285.0	[0..1]	[236..1]
gi\|82776571, gi\|... - gi\|82776571\|ref\|YP_402920.1\| nitrate reductase 1, delta subunit, assembly function [Shigella dysente...	285.0	[0..1]	[236..1]
gi\|81245730, gi\|... - gi\|82544319\|ref\|YP_408266.1\| nitrate reductase 1 delta subunit, assembly function [Shigella boydii S...	285.0	[0..1]	[236..1]
gi\|157066416, gi... - gi\|75195379\|ref\|ZP_00705449.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli HS], gi\|15... gi\|218360550, gi... - gi\|218553782\|ref\|YP_002386695.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|75190280, gi\|... - gi\|75190280\|ref\|ZP_00703547.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E24377A], ... gi\|218351474, gi... - gi\|218694742\|ref\|YP_002402409.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|187730812, gi... - gi\|75179175\|ref\|ZP_00699193.1\| COG2180: Nitrate reductase delta subunit [Shigella boydii BS512], gi\|... gi\|251784734, gi... - gi\|251784734\|ref\|YP_002999038.1\| hypothetical protein B21_01214 [Escherichia coli BL21], gi\|24237700... gi\|194424023, gi... - gi\|83587370\|ref\|ZP_00925998.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli 101-1], gi... gi\|209918471, gi... - gi\|209918471\|ref\|YP_002292555.1\| nitrate reductase 1 delta subunit [Escherichia coli SE11], gi\|20991... gi\|74312433, gi\|... - gi\|74312433\|ref\|YP_310852.1\| nitrate reductase 1, delta subunit, assembly function [Shigella sonnei ... gi\|253973212, gi... - gi\|254161311\|ref\|YP_003044419.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|188495412, gi... - gi\|75511740\|ref\|ZP_00734369.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli 53638], gi... gi\|254288119, gi... - gi\|254288119\|ref\|YP_003053867.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|192956733, gi... - gi\|75235262\|ref\|ZP_00719499.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E110019], ... gi\|75230212, gi\|... - gi\|75230212\|ref\|ZP_00716713.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli B7A], gi\|1...	285.0	[0..1]	[236..1]
gi\|83569298, gi\|... - gi\|83569298\|ref\|ZP_00920754.1\| COG2180: Nitrate reductase delta subunit [Shigella dysenteriae 1012],...	284.0	[0..1]	[236..1]
gi\|25300709 - gi\|25300709\|pir\|\|B85703 hypothetical protein narJ [imported] - Escherichia coli (strain O157:H7, su... gi\|12514947, gi\|... - gi\|15801457\|ref\|NP_287474.1\| nitrate reductase 1, delta subunit, assembly function [Escherichia coli...	284.0	[0..1]	[236..1]
gi\|227836553, gi... - gi\|227886349\|ref\|ZP_04004154.1\| respiratory nitrate reductase 1 delta chain [Escherichia coli 83972]... gi\|26247552, gi\|... - gi\|26247552\|ref\|NP_753592.1\| respiratory nitrate reductase 1 delta chain [Escherichia coli CFT073], ... gi\|215264531, gi... - gi\|215486459\|ref\|YP_002328890.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n...	283.0	[0..1]	[236..1]
gi\|192927503, gi... - gi\|75257135\|ref\|ZP_00728671.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli E22], gi\|1... gi\|218549082, gi... - gi\|218549082\|ref\|YP_002382873.1\| molybdenum-cofactor-assembly chaperone subunit (delta subunit) of n... gi\|194426047, gi... - gi\|75212663\|ref\|ZP_00712661.1\| COG2180: Nitrate reductase delta subunit [Escherichia coli B171], gi\|...	282.0	[0..1]	[236..1]
gi\|194408215, gi... - gi\|194449911\|ref\|YP_002045805.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmone... lcl\|NC_016856.1_... - [gene=narJ] [protein=nitrate reductase 1 subunit delta] [protein_id=YP_005237689.1] [location=comple... gi\|197211965, gi... - gi\|197248262\|ref\|YP_002146268.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmone... gi\|205339536, gi... - gi\|205339536\|gb\|EDZ26300.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|168820498, gi... - gi\|205342690\|gb\|EDZ29454.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|205321757, gi... - gi\|205321757\|gb\|EDZ09596.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|167993202, gi... - gi\|205328691\|gb\|EDZ15455.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonella e... gi\|161613746, gi... - gi\|161613746\|ref\|YP_001587711.1\| hypothetical protein SPAB_01471 [Salmonella enterica subsp. enteric... gi\|16420291, gi\|... - gi\|16765103\|ref\|NP_460718.1\| nitrate reductase 1 delta subunit [Salmonella typhimurium LT2], gi\|1642... gi\|62127959, gi\|... - gi\|62180326\|ref\|YP_216743.1\| nitrate reductase 1, delta subunit, chaperone required for molybdenum c... gi\|197261667, gi... - gi\|197261667\|ref\|ZP_03161741.1\| nitrate reductase molybdenum cofactor assembly chaperone 1 [Salmonel... gi\|224583748, gi... - gi\|224583748\|ref\|YP_002637546.1\| respiratory nitrate reductase 1 delta chain [Salmonella enterica su...	280.0	[0..1]	[236..1]
gi\|62127781, gi\|... - gi\|62180148\|ref\|YP_216565.1\| nitrate reductase 2, gamma subunit [Salmonella enterica subsp. enterica...	280.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIELVIVSRL LEYPDAALWQ HQQEMFEAIA ASKNLSKEDA HALGIFLRDL TAMDPLDAQV  60
   61 QYSELFDRGR ATSLLLFEHV HGESRDRGQA MVDLLAQYEQ HGLQLNSREL PDHLPLYLEY 120
  121 LSQLPQSEAV EGLKDIAPIL ALLSARLQQR ESRYAVMFDL LLKLANTAID SDKVAEKIAD 180
  181 EARDDTPQAL DAVWEEEQVK FFADKGCGDS AITAHQRRFA GAVAPQYLNI TTGGQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2o9xA
Description:	No description for 2o9xA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.685658944373883	bayes_pls_golite062009
protein binding	0.343281137579891	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: