YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110805088, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110805088, gi....

Description	E-value	Query Range	Subject Range
gi\|157154753, gi... - gi\|75190128\|ref\|ZP_00703395.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	143.0	[0..1]	[138..1]
gi\|188488083, gi... - gi\|75513514\|ref\|ZP_00735918.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|218553649, gi... - gi\|218553649\|ref\|YP_002386562.1\| export chaperone for FlgK and FlgL [Escherichia coli IAI1], gi\|2183... gi\|75257506, gi\|... - gi\|75257506\|ref\|ZP_00729009.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|193069496, gi... - gi\|75235926\|ref\|ZP_00720063.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75228338, gi\|... - gi\|75228338\|ref\|ZP_00714988.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75210343, gi\|... - gi\|75210343\|ref\|ZP_00710505.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75195254, gi\|... - gi\|75195254\|ref\|ZP_00705324.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|187428885, gi... - gi\|75175803\|ref\|ZP_00695998.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	142.0	[0..1]	[138..1]
gi\|1651525, gi\|8... - gi\|89107916\|ref\|AP_001696.1\| export chaperone for FlgK and FlgL [Escherichia coli str. K-12 substr. ... EG12665 - export chaperone for FlgK and FlgL / Initiation of flagellar filament assembly gi\|169888556, gi... - gi\|170080721\|ref\|YP_001730041.1\| export chaperone for FlgK and FlgL [Escherichia coli str. K-12 subs... gi\|238900324, gi... - gi\|238900324\|ref\|YP_002926120.1\| export chaperone for FlgK and FlgL [Escherichia coli BW2952], gi\|23... gi\|251784601, gi... - gi\|251784601\|ref\|YP_002998905.1\| hypothetical protein B21_01074 [Escherichia coli BL21], gi\|24237687... gi\|254287984, gi... - gi\|254287984\|ref\|YP_003053732.1\| export chaperone for FlgK and FlgL [Escherichia coli BL21(DE3)], gi... EG12665 - export chaperone for FlgK and FlgL / Initiation of flagellar filament assembly gi\|253973077, gi... - gi\|254161176\|ref\|YP_003044284.1\| export chaperone for FlgK and FlgL [Escherichia coli B str. REL606]... gi\|194423056, gi... - gi\|83586396\|ref\|ZP_00925030.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... FLGN_ECOLI - Flagella synthesis protein flgN - Escherichia coli gi\|73855109, gi\|... - gi\|74311632\|ref\|YP_310051.1\| protein of flagellar biosynthesis [Shigella sonnei Ss046], gi\|73855109\|...	142.0	[0..1]	[138..1]
gi\|81245875, gi\|... - gi\|82544464\|ref\|YP_408411.1\| protein of flagellar biosynthesis [Shigella boydii Sb227], gi\|81245875\|...	141.0	[0..1]	[138..1]
gi\|194432360, gi... - gi\|83570483\|ref\|ZP_00921927.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	141.0	[0..1]	[138..1]
gi\|227886572, gi... - gi\|227886572\|ref\|ZP_04004377.1\| flagella synthesis protein FlgN [Escherichia coli 83972], gi\|2278367... gi\|26247210, gi\|... - gi\|26247210\|ref\|NP_753250.1\| flagella synthesis protein FlgN [Escherichia coli CFT073], gi\|26107611\|... gi\|170683502, gi... - gi\|170683502\|ref\|YP_001744111.1\| flagella synthesis protein FlgN [Escherichia coli SMS-3-5], gi\|1705... gi\|218700427, gi... - gi\|218700427\|ref\|YP_002408056.1\| export chaperone for FlgK and FlgL [Escherichia coli IAI39], gi\|218...	140.0	[0..1]	[138..1]
gi\|218364721, gi... - gi\|218557952\|ref\|YP_002390865.1\| export chaperone for FlgK and FlgL [Escherichia coli S88], gi\|21836... gi\|75240666, gi\|... - gi\|75240666\|ref\|ZP_00724583.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|218426587, gi... - gi\|218689023\|ref\|YP_002397235.1\| export chaperone for FlgK and FlgL [Escherichia coli ED1a], gi\|2184... gi\|215264351, gi... - gi\|215486279\|ref\|YP_002328710.1\| export chaperone for FlgK and FlgL [Escherichia coli O127:H6 str. E... gi\|115512380, gi... - gi\|117623256\|ref\|YP_852169.1\| flagella synthesis protein FlgN [Escherichia coli APEC O1], gi\|1155123... gi\|91071796, gi\|... - gi\|91210222\|ref\|YP_540208.1\| flagella synthesis protein FlgN [Escherichia coli UTI89], gi\|91071796\|g... gi\|110342838, gi... - gi\|110641246\|ref\|YP_668976.1\| flagella synthesis protein FlgN [Escherichia coli 536], gi\|110342838\|g... gi\|237706944, gi... - gi\|237706944\|ref\|ZP_04537425.1\| flagella synthesis protein FlgN [Escherichia sp. 3_2_53FAA], gi\|2268...	139.0	[0..1]	[138..1]
gi\|217318786, gi... - gi\|217328359\|ref\|ZP_03444441.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. TW145... gi\|208806076, gi... - gi\|208806076\|ref\|ZP_03248413.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC420... gi\|208815589, gi... - gi\|208815589\|ref\|ZP_03256768.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC404... gi\|15830702, gi\|... - gi\|15830702\|ref\|NP_309475.1\| FlgN [Escherichia coli O157:H7], gi\|13360912\|dbj\|BAB34871.1\| protein of... gi\|208738156, gi... - gi\|208822671\|ref\|ZP_03262990.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC404... gi\|25324897, gi\|... - pir\|\|D85669 protein of flagellar biosynthesis [imported] - Escherichia coli (strain O157:H7, substra... gi\|209397144, gi... - gi\|209397144\|ref\|YP_002269916.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC41... gi\|168783600, gi... - gi\|188999067\|gb\|EDU68053.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC4076], ... gi\|15801187, gi\|... - gi\|15801187\|ref\|NP_287204.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 EDL933], gi\|1... gi\|189370496, gi... - gi\|189370496\|gb\|EDU88912.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC869], g... gi\|254792452, gi... - gi\|254792452\|ref\|YP_003077289.1\| export chaperone for FlgK and FlgL [Escherichia coli O157:H7 str. T... gi\|189375921, gi... - gi\|189375921\|gb\|EDU94337.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC508], g... gi\|195935460 - gi\|195935460\|ref\|ZP_03080842.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC402... gi\|168758638, gi... - gi\|189354585\|gb\|EDU73004.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC4401], ... gi\|189365528, gi... - gi\|189365528\|gb\|EDU83944.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC4501], ... gi\|168767729, gi... - gi\|189363297\|gb\|EDU81716.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC4486], ... gi\|187770400, gi... - gi\|187770400\|gb\|EDU34244.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC4196], ... gi\|15830702, gi\|... - gi\|15830702\|ref\|NP_309475.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. Sakai], ... gi\|188018051, gi... - gi\|188018051\|gb\|EDU56173.1\| flagella synthesis protein FlgN [Escherichia coli O157:H7 str. EC4113], ...	138.0	[0..1]	[138..1]
gi\|505362 - gi\|505362\|dbj\|BAA04979.1\| FlgN protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi\|505362\|dbj\|BA... - FlgN protein [Salmonella typhimurium]	132.0	[0..1]	[138..1]
gi\|161614608, gi... - gi\|161614608\|ref\|YP_001588573.1\| hypothetical protein SPAB_02358 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=flgN] [protein=putative FlgK/FlgL export chaperone] [protein_id=YP_005236925.1] [location=comp... gi\|18026884\|gb\|A... - flagellar protein FlgN [Salmonella choleraesuis] FLGN_SALTY - Flagella synthesis protein flgN OS=Salmonella typhimurium GN=flgN PE=3 SV=1 FLGN_SALTI - Flagella synthesis protein flgN OS=Salmonella typhi GN=flgN PE=3 SV=1 FLGN_SALTI - Flagella synthesis protein FlgN OS=Salmonella typhi GN=flgN PE=3 SV=1 gi\|18026884 - gi\|18026884\|gb\|AAL55670.1\| flagellar protein FlgN [Salmonella choleraesuis] FLGN_SALTY - Flagella synthesis protein FlgN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=f... gi\|29142182, gi\|... - gi\|29142182\|ref\|NP_805524.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica se... gi\|16760047 - gi\|16760047\|ref\|NP_455664.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica se... FLGN_SALTY - Flagella synthesis protein flgN OS=Salmonella typhimurium GN=flgN PE=3 SV=1 gi\|62127321, gi\|... - gi\|62179688\|ref\|YP_216105.1\| flagellar biosynthesis: belived to be export chaperone for FlgK and Flg... gi\|56128099, gi\|... - gi\|56413842\|ref\|YP_150917.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica se... gi\|206709124, gi... - gi\|207857321\|ref\|YP_002243972.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric... gi\|205353091, gi... - gi\|205353091\|ref\|YP_002226892.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric... gi\|197362765, gi... - gi\|197362765\|ref\|YP_002142402.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric... gi\|205341033, gi... - gi\|205341033\|gb\|EDZ27797.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enterica ser... gi\|224584325, gi... - gi\|224584325\|ref\|YP_002638123.1\| flagella synthesis protein FlgN [Salmonella enterica subsp. enteric...	128.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLAEILDQ MSAVLNDLKT VMDQEQQHLS MGQINGSQLQ WITEQKSSLL ATLDYLEQLR  60
   61 KKEPNTANSV DISQRWQEIT VKTQQLRQMN QHNGWLLEGQ IERNQQALEM LKPHQEPTLY 120
  121 GANGQTSTPH RGSKKISI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2fupA
Description:	Crystal structure of hypothetical protein PA3352 from Pseudomonas aeruginosa at 1.48 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits