YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110614036, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110614036, gi....

Description	E-value	Query Range	Subject Range
gi\|82775808, gi\|... - gi\|82775808\|ref\|YP_402155.1\| hypothetical protein SDY_0458 [Shigella dysenteriae Sd197], gi\|81239956... YBAJ_ECOL6, TOMB... - Uncharacterized protein ybaJ OS=Escherichia coli O6 GN=ybaJ PE=4 SV=1, Hha toxicity modulator TomB O... gi\|85674600, gi\|... - gi\|89107330\|ref\|AP_001110.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|188487532, gi... - gi\|75514584\|ref\|ZP_00736839.1\| hypothetical protein Ecol5_01001358 [Escherichia coli 53638], gi\|1884... gi\|73854517, gi\|... - gi\|74311040\|ref\|YP_309459.1\| hypothetical protein SSON_0448 [Shigella sonnei Ss046], gi\|73854517\|gb\|... YBAJ_ECOLI - Hypothetical protein ybaJ - Escherichia coli gi\|157065667, gi... - gi\|75194681\|ref\|ZP_00704751.1\| hypothetical protein EcolH_01000460 [Escherichia coli HS], gi\|1571599... gi\|194412974, gi... - gi\|75209783\|ref\|ZP_00709985.1\| hypothetical protein EcolB_01003081 [Escherichia coli B171], gi\|19442... gi\|83587084, gi\|... - gi\|83587084\|ref\|ZP_00925714.1\| hypothetical protein Ecol1_01001827 [Escherichia coli 101-1], gi\|1944... gi\|157079308, gi... - gi\|75189529\|ref\|ZP_00702796.1\| hypothetical protein EcolE_01002814 [Escherichia coli E24377A], gi\|15... gi\|75239043, gi\|... - gi\|75239043\|ref\|ZP_00723025.1\| hypothetical protein EcolE1_01000810 [Escherichia coli E110019], gi\|1... gi\|192929152, gi... - gi\|75257894\|ref\|ZP_00729372.1\| hypothetical protein EcolE2_01002377 [Escherichia coli E22], gi\|19306... gi\|190902471, gi... - gi\|75229378\|ref\|ZP_00715933.1\| hypothetical protein EcolB7_01002422 [Escherichia coli B7A], gi\|19116... gi\|190906034, gi... - gi\|75238213\|ref\|ZP_00722214.1\| hypothetical protein EcolF_01003538 [Escherichia coli F11], gi\|191173... gi\|124499313, gi... - gi\|124530288\|ref\|ZP_01701007.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499313\|gb... gi\|218703744, gi... - gi\|218703744\|ref\|YP_002411263.1\| hypothetical protein ECUMN_0500 [Escherichia coli UMN026], gi\|21843... EG12429 - Hha toxicity attenuator; conjugation-related protein / Attenuates Hha toxicity, possibly by blocking... gi\|168747863, gi... - gi\|188017649\|gb\|EDU55771.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189358036, gi... - gi\|189358036\|gb\|EDU76455.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189369054, gi... - gi\|189369054\|gb\|EDU87470.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168768416, gi... - gi\|189362516\|gb\|EDU80935.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187767551, gi... - gi\|187767551\|gb\|EDU31395.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168778954, gi... - gi\|189003073\|gb\|EDU72059.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|209157680, gi... - gi\|209396280\|ref\|YP_002269111.1\| hypothetical protein ECH74115_0551 [Escherichia coli O157:H7 str. E... gi\|91209534, gi\|... - gi\|91209534\|ref\|YP_539520.1\| hypothetical protein UTI89_C0488 [Escherichia coli UTI89], gi\|91071108\|... gi\|215485541, gi... - gi\|215485541\|ref\|YP_002327972.1\| hypothetical protein E2348C_0396 [Escherichia coli O127:H6 str. E23... TOMB_ECOL6 - Hha toxicity modulator TomB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tomB P... gi\|13359971, gi\|... - gi\|15829768\|ref\|NP_308541.1\| hypothetical protein ECs0514 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217326302, gi... - gi\|217326302\|ref\|ZP_03442386.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|110342314, gi... - gi\|110640722\|ref\|YP_668450.1\| hypothetical protein ECP_0522 [Escherichia coli 536], gi\|110342314\|gb\|... gi\|218553027, gi... - gi\|218553027\|ref\|YP_002385940.1\| hypothetical protein ECIAI1_0464 [Escherichia coli IAI1], gi\|218359... EG12429 - Hha toxicity attenuator; conjugation-related protein / Attenuates Hha toxicity, possibly by blocking... gi\|218557371, gi... - gi\|218557371\|ref\|YP_002390284.1\| hypothetical protein ECS88_0458 [Escherichia coli S88], gi\|21836414... TOMB_ECO57 - Hha toxicity modulator TomB OS=Escherichia coli O157:H7 GN=tomB PE=3 SV=1 gi\|218425888, gi... - gi\|218688324\|ref\|YP_002396536.1\| hypothetical protein ECED1_0484 [Escherichia coli ED1a], gi\|2184258... gi\|218350655, gi... - gi\|218693923\|ref\|YP_002401590.1\| hypothetical protein EC55989_0474 [Escherichia coli 55989], gi\|2183... gi\|12513328, gi\|... - gi\|15800190\|ref\|NP_286202.1\| hypothetical protein Z0574 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|218698628, gi... - gi\|218698628\|ref\|YP_002406257.1\| hypothetical protein ECIAI39_0213 [Escherichia coli IAI39], gi\|2183... gi\|168786312, gi... - gi\|189373703\|gb\|EDU92119.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|170021151, gi... - gi\|170021151\|ref\|YP_001726105.1\| hypothetical protein EcolC_3155 [Escherichia coli ATCC 8739], gi\|16... gi\|227884527, gi... - gi\|227884527\|ref\|ZP_04002332.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783861... gi\|169887881, gi... - gi\|170080046\|ref\|YP_001729366.1\| hypothetical protein ECDH10B_0417 [Escherichia coli str. K-12 subst... gi\|237707543, gi... - gi\|237707543\|ref\|ZP_04538024.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|170680298, gi... - gi\|170680298\|ref\|YP_001742605.1\| hypothetical protein EcSMS35_0504 [Escherichia coli SMS-3-5], gi\|17... gi\|238862847, gi... - gi\|238899748\|ref\|YP_002925544.1\| hypothetical protein BWG_0342 [Escherichia coli BW2952], gi\|2388628... gi\|195936024 - gi\|195936024\|ref\|ZP_03081406.1\| hypothetical protein EscherichcoliO157_06091 [Escherichia coli O157:... gi\|242376243, gi... - gi\|251783970\|ref\|YP_002998274.1\| hypothetical protein B21_00417 [Escherichia coli BL21], gi\|24237624... gi\|208806578, gi... - gi\|208806578\|ref\|ZP_03248915.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|254287334, gi... - gi\|254287334\|ref\|YP_003053082.1\| hypothetical protein ECD_00412 [Escherichia coli BL21(DE3)], gi\|253... gi\|208816222, gi... - gi\|208816222\|ref\|ZP_03257401.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|253972431, gi... - gi\|254160530\|ref\|YP_003043638.1\| hypothetical protein ECB_00412 [Escherichia coli B str. REL606], gi... gi\|208822840, gi... - gi\|208822840\|ref\|ZP_03263158.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|254791644, gi... - gi\|254791644\|ref\|YP_003076481.1\| hypothetical protein ECSP_0528 [Escherichia coli O157:H7 str. TW143...	244.0	[0..1]	[124..1]
gi\|83570210 - gi\|83570210\|ref\|ZP_00921656.1\| hypothetical protein Sdys1_01001495 [Shigella dysenteriae 1012]	242.0	[0..1]	[124..1]
gi\|81244365, gi\|... - gi\|82542954\|ref\|YP_406901.1\| hypothetical protein SBO_0361 [Shigella boydii Sb227], gi\|81244365\|gb\|A...	241.0	[0..1]	[124..1]
gi\|62126719, gi\|... - gi\|62179086\|ref\|YP_215503.1\| hypothetical protein SC0516 [Salmonella enterica subsp. enterica serova... gi\|56128628, gi\|... - gi\|56414371\|ref\|YP_151446.1\| hypothetical protein SPA2248 [Salmonella enterica subsp. enterica serov... gi\|194451112, gi... - gi\|194451112\|ref\|YP_002044508.1\| hypothetical protein SeHA_C0577 [Salmonella enterica subsp. enteric... gi\|194457807, gi... - gi\|194471443\|ref\|ZP_03077427.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194736974, gi... - gi\|194736974\|ref\|YP_002113505.1\| hypothetical protein SeSA_A0534 [Salmonella enterica subsp. enteric... gi\|197248986, gi... - gi\|197248986\|ref\|YP_002145455.1\| hypothetical protein SeAg_B0515 [Salmonella enterica subsp. enteric... gi\|205349995, gi... - gi\|205349995\|gb\|EDZ36626.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168465569, gi... - gi\|195631580\|gb\|EDX50100.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168818911, gi... - gi\|205344056\|gb\|EDZ30820.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194402528, gi... - gi\|194443865\|ref\|YP_002039717.1\| hypothetical protein SNSL254_A0524 [Salmonella enterica subsp. ente... gi\|29138406, gi\|... - gi\|29142774\|ref\|NP_806116.1\| hypothetical protein t2386 [Salmonella enterica subsp. enterica serovar... gi\|205330950, gi... - gi\|205330950\|gb\|EDZ17714.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16759454 - gi\|16759454\|ref\|NP_455071.1\| hypothetical protein STY0517 [Salmonella enterica subsp. enterica serov... gi\|168231463, gi... - gi\|205334063\|gb\|EDZ20827.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16501746, gi\|... - gi\|25340081\|pir\|\|AE0561 conserved hypothetical protein STY0517 [imported] - Salmonella enterica subs... gi\|168237589, gi... - gi\|197289461\|gb\|EDY28824.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16763854, gi\|... - gi\|16763854\|ref\|NP_459469.1\| hypothetical protein STM0474 [Salmonella typhimurium LT2], gi\|16418981\|... gi\|168240304, gi... - gi\|205339948\|gb\|EDZ26712.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323412, gi... - gi\|205323412\|gb\|EDZ11251.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213650347 - gi\|213650347\|ref\|ZP_03380400.1\| hypothetical protein SentesTy_25735 [Salmonella enterica subsp. ente... gi\|213855676 - gi\|213855676\|ref\|ZP_03383916.1\| hypothetical protein SentesT_17203 [Salmonella enterica subsp. enter... gi\|224466838, gi... - gi\|224582311\|ref\|YP_002636109.1\| hypothetical protein SPC_0488 [Salmonella enterica subsp. enterica ... gi\|213418115 - gi\|213418115\|ref\|ZP_03351183.1\| hypothetical protein Salmonentericaenterica_09463 [Salmonella enteri... gi\|213427135 - gi\|213427135\|ref\|ZP_03359885.1\| hypothetical protein SentesTyphi_16880 [Salmonella enterica subsp. e... gi\|213579730 - gi\|213579730\|ref\|ZP_03361556.1\| hypothetical protein SentesTyph_00395 [Salmonella enterica subsp. en... gi\|213612547 - gi\|213612547\|ref\|ZP_03370373.1\| hypothetical protein SentesTyp_08607 [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=ybaJ] [protein=hypothetical protein] [protein_id=YP_005236171.1] [location=complement(529071..... gi\|204930465, gi... - gi\|204930465\|ref\|ZP_03221395.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205271563, gi... - gi\|205351782\|ref\|YP_002225583.1\| hypothetical protein SG0484 [Salmonella enterica subsp. enterica se... gi\|206707756, gi... - gi\|207855953\|ref\|YP_002242604.1\| hypothetical protein SEN0455 [Salmonella enterica subsp. enterica s... gi\|213162900 - gi\|213162900\|ref\|ZP_03348610.1\| hypothetical protein Salmoneentericaenterica_23906 [Salmonella enter... gi\|197263742, gi... - gi\|197263742\|ref\|ZP_03163816.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197094768, gi... - gi\|197363291\|ref\|YP_002142928.1\| hypothetical protein SSPA2091 [Salmonella enterica subsp. enterica ... gi\|198242885, gi... - gi\|198242885\|ref\|YP_002214427.1\| hypothetical protein SeD_A0518 [Salmonella enterica subsp. enterica... gi\|199603408, gi... - gi\|200390963\|ref\|ZP_03217574.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|238911396 - gi\|238911396\|ref\|ZP_04655233.1\| hypothetical protein SentesTe_09690 [Salmonella enterica subsp. ente...	237.0	[0..1]	[124..1]
gi\|37222596 - gi\|37222596\|gb\|AAQ90016.1\| YmoB [Yersinia enterocolitica] gi\|123443322, gi... - gi\|123443322\|ref\|YP_001007296.1\| hypothetical protein YE3114 [Yersinia enterocolitica subsp. enteroc...	222.0	[0..1]	[111..1]
gi\|77974282 - gi\|77974282\|ref\|ZP_00829823.1\| hypothetical protein YfreA_01001862 [Yersinia frederiksenii ATCC 3364... gi\|238696945, gi... - gi\|238764838\|ref\|ZP_04625779.1\| hypothetical protein ykris0001_31120 [Yersinia kristensenii ATCC 336...	222.0	[0..1]	[111..1]
gi\|238791453, gi... - gi\|77979372\|ref\|ZP_00834791.1\| hypothetical protein YintA_01000856 [Yersinia intermedia ATCC 29909],...	220.0	[0..1]	[111..1]
gi\|169751964, gi... - gi\|170025430\|ref\|YP_001721935.1\| hypothetical protein YPK_3213 [Yersinia pseudotuberculosis YPIII], ... gi\|186697373, gi... - gi\|186894347\|ref\|YP_001871459.1\| hypothetical protein YPTS_1021 [Yersinia pseudotuberculosis PB1/+],... gi\|166205772, gi... - gi\|166212985\|ref\|ZP_02239020.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229838739, gi... - gi\|229838739\|ref\|ZP_04458898.1\| hypothetical protein YPH_0993 [Yersinia pestis biovar Orientalis str... gi\|167421516, gi... - gi\|167421516\|ref\|ZP_02313269.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423603, gi... - gi\|167423603\|ref\|ZP_02315356.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229899307, gi... - gi\|229899307\|ref\|ZP_04514450.1\| hypothetical protein YPF_3776 [Yersinia pestis biovar Orientalis str... gi\|167470957 - gi\|167470957\|ref\|ZP_02335661.1\| hypothetical protein YpesF_24547 [Yersinia pestis FV-1] gi\|229896108, gi... - gi\|229896108\|ref\|ZP_04511278.1\| hypothetical protein YPS_3920 [Yersinia pestis Pestoides A], gi\|2297... gi\|165990013, gi... - gi\|166011013\|ref\|ZP_02231911.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|108774766, gi... - gi\|229901349\|ref\|ZP_04516471.1\| putative cytoplasmic protein [Yersinia pestis Nepal516], gi\|22968127... gi\|108808623, gi... - gi\|108808623\|ref\|YP_652539.1\| hypothetical protein YPA_2632 [Yersinia pestis Antiqua], gi\|108780536\|... gi\|149365017, gi... - gi\|149365017\|ref\|ZP_01887052.1\| hypothetical protein YPE_0142 [Yersinia pestis CA88-4125], gi\|149291... gi\|145211727, gi... - gi\|145600031\|ref\|YP_001164107.1\| hypothetical protein YPDSF_2772 [Yersinia pestis Pestoides F], gi\|1... Q66DR4\|Q66DR4_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|22124954, gi\|... - gi\|22124954\|ref\|NP_668377.1\| hypothetical protein y1047 [Yersinia pestis KIM], gi\|21957795\|gb\|AAM846... gi\|25340079 - pir\|\|AI0380 conserved hypothetical protein YPO3137 [imported] - Yersinia pestis (strain CO92) gi\|51595329, gi\|... - gi\|51595329\|ref\|YP_069520.1\| hypothetical protein YPTB0979 [Yersinia pseudotuberculosis IP 32953], g... gi\|45435500, gi\|... - gi\|45440643\|ref\|NP_992182.1\| hypothetical protein YP_0794 [Yersinia pestis biovar Microtus str. 9100... gi\|16123299, gi\|... - gi\|218930167\|ref\|YP_002348042.1\| hypothetical protein YPO3137 [Yersinia pestis CO92], gi\|16123299\|re... gi\|152960309, gi... - gi\|153948814\|ref\|YP_001402032.1\| hypothetical protein YpsIP31758_3072 [Yersinia pseudotuberculosis I...	220.0	[0..1]	[111..1]
gi\|77957218, gi\|... - gi\|77957218\|ref\|ZP_00821279.1\| hypothetical protein YberA_01002539 [Yersinia bercovieri ATCC 43970],...	220.0	[0..1]	[111..1]
gi\|77962341, gi\|... - gi\|77962341\|ref\|ZP_00826162.1\| hypothetical protein YmolA_01001370 [Yersinia mollaretii ATCC 43969],...	219.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEYSPKRHD IAQLKFLCET LYHDCLANLE ESNHGWVNDP TSAINLQLNE LIEHIATFAL  60
   61 NYKIKYNEDN KLIEQIDEYL DDTFMLFSSY GINMQALQKW RKSGNRLFRC FVNATKENPA 120
  121 SLSC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits