YRC Public Data Repository - Protein Structure Prediction

Protein:	NINJ2_MOUSE
Organism:	Mus musculus
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NINJ2_MOUSE.

Description	E-value	Query Range	Subject Range
NINJ2_RAT - Ninjurin-2 OS=Rattus norvegicus GN=Ninj2 PE=2 SV=1	209.0	[0..1]	[143..1]
gi\|73947188 - gi\|73947188\|ref\|XP_853215.1\| PREDICTED: similar to ninjurin 1 [Canis familiaris]	207.0	[0..1]	[130..158]
gi\|109095031 - gi\|109095031\|ref\|XP_001095186.1\| PREDICTED: similar to ninjurin 2 [Macaca mulatta]	205.0	[0..1]	[143..46]
gi\|114625612 - gi\|114625612\|ref\|XP_528716.2\| PREDICTED: similar to NINJ1 protein [Pan troglodytes]	203.0	[0..1]	[130..314]
gi\|119609365, gi... - gi\|39725946\|ref\|NP_057617.2\| ninjurin 2 [Homo sapiens], gi\|119609365\|gb\|EAW88959.1\| ninjurin 2, isof... gi\|157169758, gi... - gi\|157169758\|gb\|AAI53187.1\| Ninjurin 2 [synthetic construct], gi\|151555093\|gb\|AAI48621.1\| Ninjurin 2... HGNC:7825\|MIM:60... - 2	201.0	[0..1]	[143..47]
NINJ1_MOUSE - Ninjurin-1 OS=Mus musculus GN=Ninj1 PE=1 SV=1	194.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESDRETIHL QHRHSMRGGN QRIDLNFYAT KKSVAESMLD VALFMSNAMR LKSVLQQGPF  60
   61 AEYYTTLVTL IIVSLLLQVV ISLLLVFIAI LNLNEVENQR HLNKLNNAAT ILVFITVVIN 120
  121 IFITAFGAHH AASMAARTSS NPI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.455932
Match:	PF04923.3
Description:	No description for PF04923.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits