YRC Public Data Repository - Protein Structure Prediction

Protein:	AR6P1_MOUSE
Organism:	Mus musculus
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AR6P1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109459299, gi... - gi\|109462742\|ref\|XP_001078720.1\| PREDICTED: similar to ARL-6-interacting protein 1 (ADP-ribosylation...	382.0	[0..1]	[203..89]
gi\|6739575 - gi\|6739575\|gb\|AAF27313.1\|AF172088_1 TBX2 protein [Mus musculus]	371.0	[0..1]	[203..36]
gi\|505098 - gi\|505098\|dbj\|BAA06683.1\| KIAA0069 [Homo sapiens]	365.0	[0..1]	[203..24]
gi\|73958785 - gi\|73958785\|ref\|XP_537908.2\| PREDICTED: similar to ARL-6 interacting protein-1 (Aip-1) isoform 1 [Ca...	361.0	[0..1]	[203..1]
AR6P1_PONPY - ARL-6-interacting protein 1 - Pongo pygmaeus (Orangutan) AR6P1_PONAB - ADP-ribosylation factor-like protein 6-interacting protein 1 OS=Pongo abelii GN=ARL6IP1 PE=2 SV=1	360.0	[0..1]	[203..1]
gi\|109127727 - gi\|109127727\|ref\|XP_001082004.1\| PREDICTED: ADP-ribosylation factor-like 6 interacting protein [Maca...	359.0	[0..1]	[203..1]

Back

Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGDNRSSN LLAVETASLE EQLQGWGEVM LMADKVLRWE RAWFPPAIMG VVSLLFLIIY  60
   61 YL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPSVLSGVSC FVMFLCLADY LVPILAPRIF GSNKWTTEQQ QRFHEICSNL VKTRRRAVGW  60
   61 WKRLFSLKEE KPKMYFMTMI ISLAAVAWVG QQVHNLLLTY LIVTFVLLLP GLNQHGIILK 120
  121 YIGMAKREIN KLLKQKEKKN E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits