YRC Public Data Repository - Protein Structure Prediction

Protein:	SPR1A_MOUSE
Organism:	Mus musculus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR1A_MOUSE.

Description	E-value	Query Range	Subject Range
SPR1A_RAT - Cornifin-A OS=Rattus norvegicus GN=Sprr1a PE=2 SV=1	110.0	[0..1]	[144..1]
gi\|227947 - gi\|227947\|prf\|\|1714184A cell surface antigen	108.0	[0..4]	[143..827]
SPAP_STRMU - Cell surface antigen I/II OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=spaP PE... SPAP_STRMU - Cell surface antigen I/II OS=Streptococcus mutans GN=spaP PE=1 SV=2	107.0	[0..4]	[143..828]
gi\|25990270 - gi\|25990270\|gb\|AAC44101.3\| streptococcal surface protein A precursor [Streptococcus gordonii]	104.0	[0..4]	[141..825]
gi\|7209719 - gi\|7209719\|dbj\|BAA92310.1\| unnamed protein product [Mus musculus]	102.0	[0..2]	[142..457]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHQQKQPC TVPPQLHQQQ VKQPCQPPPQ EPCAPKTKDP CHPVPEPCNP KGPEPCHPKA  60
   61 PEPCHPKAPE PCNPKVPEPC QPKVPEPCQP KVPEPCNPKV PEPCQPKAPE PCHPKAPEPC 120
  121 HPVVPEPCPS TVTPSPYQQK TKQK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.65
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits