YRC Public Data Repository - Protein Structure Prediction

Protein:	IDLC_MOUSE
Organism:	Mus musculus
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDLC_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|37595560, gi\|... - gi\|56202936\|emb\|CAI20553.1\| dynein, axonemal, light intermediate chain 1 [Homo sapiens], gi\|37595560... gi\|114555595 - gi\|114555595\|ref\|XP_001169634.1\| PREDICTED: axonemal dynein light chain isoform 1 [Pan troglodytes]	400.0	[0..1]	[258..23]
gi\|109002119 - gi\|109002119\|ref\|XP_001111996.1\| PREDICTED: similar to axonemal dynein light chain [Macaca mulatta]	397.0	[0..1]	[258..23]
gi\|114555597 - gi\|114555597\|ref\|XP_513325.2\| PREDICTED: axonemal dynein light chain isoform 2 [Pan troglodytes]	395.0	[0..1]	[247..23]
gi\|76614515 - gi\|76614515\|ref\|XP_607493.2\| PREDICTED: similar to dynein, axonemal, light intermediate polypeptide ...	388.0	[0..1]	[258..1]
IDLC_RAT - Axonemal dynein light intermediate polypeptide 1 OS=Rattus norvegicus GN=Dnali1 PE=2 SV=1	388.0	[0..1]	[258..1]
IDLC_MACFA - Axonemal dynein light intermediate polypeptide 1 OS=Macaca fascicularis GN=DNALI1 PE=2 SV=1	386.0	[0..1]	[258..1]
gi\|110002649 - gi\|110002649\|gb\|AAI18620.1\| Dynein, axonemal, light intermediate polypeptide 1 [Mus musculus]	378.0	[0..1]	[258..1]
IDLC_STRPU - 33 kDa inner dynein arm light chain, axonemal OS=Strongylocentrotus purpuratus PE=1 SV=1	360.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPPADSLLK YDTPVLVSRN TEKRSPTARP LKVTIQQPGP SSTSPQPPKA KLPSTSCVPD  60
   61 PTKQAEEILN AILPPREWVE DTQLWIQQVS STPSTRMDVV HLQEQLDLKL QQRQARETGI 120
  121 CPVRRELYSQ CFDELIREVT INCAERGLLL LRVRDEIHMT IAAYQTLYES SVAFGMRKAL 180
  181 QAEQGKSDME RKITELETEK RDLERQVNEQ KAKCEATEKR ESERRQVEEK KHNEEIQFLK 240
  241 RTNQQLKAQL EGIIAPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits