YRC Public Data Repository - Protein Structure Prediction

Protein:	TR105_MOUSE
Organism:	Mus musculus
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR105_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73953906 - gi\|73953906\|ref\|XP_853735.1\| PREDICTED: similar to Opsin-4 (Melanopsin) [Canis familiaris]	219.0	[0..5]	[298..96]
gi\|68370558 - gi\|68370558\|ref\|XP_692751.1\| PREDICTED: similar to Galanin receptor type 2 (GAL2-R) (GALR2) [Danio r...	219.0	[0..4]	[296..371]
gi\|114602683 - gi\|114602683\|ref\|XP_527068.2\| PREDICTED: adrenergic, beta-2-, receptor, surface [Pan troglodytes]	212.0	[0..4]	[298..338]
OPN4_BRABE - Melanopsin OS=Branchiostoma belcheri GN=OPN4 PE=1 SV=1	207.0	[0..3]	[297..82]
gi\|21951818 - gi\|21951818\|gb\|AAM82355.1\|AF311307_1 somatostatin receptor type 3 [Carassius auratus]	201.0	[0..7]	[296..58]
gi\|110764421 - gi\|110764421\|ref\|XP_395084.3\| PREDICTED: similar to Neuropeptide Y receptor-like CG5811-PA [Apis mel...	200.0	[0..8]	[297..384]
OPN4_PHOSU - Melanopsin OS=Phodopus sungorus GN=OPN4 PE=2 SV=1	198.0	[0..5]	[298..68]
OPN4B_GADMO - Melanopsin-B OS=Gadus morhua GN=opn4b PE=2 SV=1	197.0	[0..5]	[297..17]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSAAEGILL SIATVEAGLG VLGNTFIALV NCMDWAKNNK LSMTGFLLIG LATSRIFIVW  60
   61 LLTLDAYAKL FYPSKYFSSS LIEIISYIWM TVNHLTVWFA TSLSIFYFLK IANFSDCVFL 120
  121 WLKRRTDKAF VFLLGCLLTS WVISFSFVVK VMKDGKVNHR NRTSEMYWEK RQFTINYVFL 180
  181 NIGVISLFMM TLTACFLLIM SLWRHSRQMQ SGVSGFRDLN TEAHVKAIKF LISFIILFVL 240
  241 YFIGVSIEII CIFIPENKLL FIFGFTTASI YPCCHSFILI LSNSQLKQAF VKVLQGLKFF 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits