YRC Public Data Repository - Protein Structure Prediction

Protein:	TA2R4_MOUSE
Organism:	Mus musculus
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TA2R4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|21951818 - gi\|21951818\|gb\|AAM82355.1\|AF311307_1 somatostatin receptor type 3 [Carassius auratus]	214.0	[0..7]	[294..58]
gi\|49169818, gi\|... - gi\|62635496\|gb\|AAX90617.1\| Sstr4 [Mus musculus], gi\|49169818\|ref\|NP_033245.2\| somatostatin receptor ...	213.0	[0..3]	[296..41]
gi\|68370558 - gi\|68370558\|ref\|XP_692751.1\| PREDICTED: similar to Galanin receptor type 2 (GAL2-R) (GALR2) [Danio r...	213.0	[0..4]	[295..371]
SSR4_RAT - Somatostatin receptor type 4 OS=Rattus norvegicus GN=Sstr4 PE=1 SV=1	211.0	[0..3]	[296..40]
gi\|55651326 - gi\|55651326\|ref\|XP_525282.1\| PREDICTED: somatostatin receptor 4 [Pan troglodytes]	211.0	[0..3]	[296..44]
gi\|73953906 - gi\|73953906\|ref\|XP_853735.1\| PREDICTED: similar to Opsin-4 (Melanopsin) [Canis familiaris]	210.0	[0..6]	[296..97]
gi\|71895761, gi\|... - gi\|71895761\|ref\|NP_001026689.1\| somatostatin receptor 4 [Gallus gallus], gi\|67848396\|gb\|AAY82239.1\| ...	209.0	[0..4]	[296..39]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWELYVFVF AASVFLNFVG IIANLFIIVI IIKTWVNSRR IASPDRILFS LAITRFLTLG  60
   61 LFLLNSVYIA TNTGRSVYFS TFFLLCWKFL DANSLWLVTI LNSLYCVKIT NFQHPVFLLL 120
  121 KRTISMKTTS LLLACLLISA LTTLLYYMLS QISRFPEHII GRNDTSFDLS DGILTLVASL 180
  181 VLNSLLQFML NVTFASLLIH SLRRHIQKMQ RNRTSFWNPQ TEAHMGAMRL MICFLVLYIP 240
  241 YSIATLLYLP SYMRKNLRAQ AICMIITAAY PPGHSVLLII THHKLKAKAK KIFCFYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits