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View Structure Prediction Details

Protein: SYM_ORYSA
Organism: Oryza sativa
Length: 801 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SYM_ORYSA.

Predicted Domain #1
Region A:
Residues: [1-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPPPPPKL PVPGRRNILV TSALPYVNNV PHLGNIIGCV LSADVFARYC RLRGYNVIYI  60
   61 CGTDEYGTAT ETKAMEEKCS PKEICDKYHA VHSEVYKWFD IKFDKFGRTS SPQQTEVCQA 120
  121 IFQKLMENNW LTENTMQQLY CDTCQRFLAD RLVEGKCPTE GCNYEAARGD QCENCSKLLN 180
  181 PTELIDPKCK VCKNTPRVRD TDHLFLELPL LSDKLVNYIN ETSVAGMWSQ NAIQATNAWL 240
  241 KEGLKPRCIT RDLKWGVPVP HEKYKDKVFY VWFDAPIGYV SITASYTPDW EKWWKDPDNV 300
  301 ELFQFMGKDN VPFHTVMFPS TLLGTGEKWT MMKTISVTEY LNYEAGKFSK SHGIGVFGND 360
  361 AKDTNIPPEV WRYYLLTNRP EVSDTLFTWA DLQAKLNSEL LNNLGNFINR VLSFVAKPAG 420
  421 AGYDSIVPDA PNAESHPLTK ALVEKTNKWV EQYLEAMEKV KLKQGLKSAM GISSDGNAYL 480
  481 QESQFWKLYK EDPAACAVVM KTSVGVVYLL ACLLEPFMPS FSNEVLLQLN MTPEESLSFC 540
  541 DDKGEIAKAK RPWDFVSAGH KIGKPSPLFK ELKDEEVESF RNKFAGSQAE RSSKAQADAE 600
  601 AKKVADKLKG TKLSDGGQKK EQKKQSGGSK SKNAEVDVTV AKLDIRVGLI RKAQKHPDAD 660
  661 SLYVEEIDVG EEAPRTVVSG LVKFIPLEEM QNRKVCVLCN LKPVAMRGIK SHAMVLAASN 720
  721 EDHTKVELVE PP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 136.0
Match: 1rqgA
Description: Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [733-801]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESAAVGERVT FAGYSGEPEA SLNAKSKTWE KLSADLHSNG ELVACYKDVP FTTSAGVCKV  60
   61 KSIASGEIR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.0
Match: 1eujA
Description: EMAP II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle