YRC Public Data Repository - Protein Structure Prediction

Protein:	KRA54_MOUSE
Organism:	Mus musculus
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRA54_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114597018 - gi\|114597018\|ref\|XP_001160481.1\| PREDICTED: similar to Ten-m3 isoform 3 [Pan troglodytes]	230.0	[0..3]	[222..511]
gi\|109076273 - gi\|109076273\|ref\|XP_001091645.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 3 [Macaca mula...	229.0	[0..3]	[222..511]
gi\|119625107, gi... - gi\|119625107\|gb\|EAX04702.1\| hCG2025760, isoform CRA_a [Homo sapiens], gi\|113415868\|ref\|XP_936693.2\| ...	229.0	[0..3]	[222..511]
TEN3_MOUSE - Teneurin-3 OS=Mus musculus GN=Tenm3 PE=1 SV=1	228.0	[0..3]	[222..511]
gi\|76655599 - gi\|76655599\|ref\|XP_870167.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 2 [Bos taurus]	228.0	[0..3]	[222..511]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCCGCSGGC GSSCGGCGSS CCKPVCCCVP VCSCSSCGGC KGGCGSCGGC KGGCGSCGGC  60
   61 KGGCGSCGGC KGGCCQSSCC KPCCCQSSCC KPCCSSGCGS SCCQSSCCKP CCCQSSCCKP 120
  121 CCSSGCGSSC CQSSCCKPCC CQSSCCKPCC CQSSCCKPCC SSGCGSSCCQ SSCCKPCCCQ 180
  181 SSCCKPCCCQ SSCCKPCCCQ SSCCKPCCCQ SSCCAPVCCQ CKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.69897
Match:	1jv2B
Description:	Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits