YRC Public Data Repository - Protein Structure Prediction

Protein:	STX6_MOUSE
Organism:	Mus musculus
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STX6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109099266 - gi\|109099266\|ref\|XP_001111568.1\| PREDICTED: similar to syntaxin 2 isoform 2 [Macaca mulatta]	177.0	[0..11]	[254..131]
gi\|73958357 - gi\|73958357\|ref\|XP_547038.2\| PREDICTED: similar to Syntaxin-1B2 (Syntaxin 1B) (P35B) [Canis familiar...	171.0	[0..5]	[234..38]
gi\|220777, gi\|285304 - pir\|\|A38141 neuronal cell membrane antigen HPC-1 - rat (fragment), gi\|220777\|dbj\|BAA01231.1\| HPC-1 ...	157.0	[0..5]	[250..41]
gi\|531458, gi\|74... - gi\|7447071\|pir\|\|G01485 syntaxin - human, gi\|531458\|gb\|AAA20940.1\| syntaxin [Homo sapiens]	157.0	[0..5]	[250..2]
gi\|118404044, gi... - gi\|118404044\|ref\|NP_001072191.1\| syntaxin 1A (brain) [Xenopus (Silurana) tropicalis], gi\|110645670\|g...	156.0	[0..5]	[250..31]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMEDPFFVV KGEVQKAVNT AQGLFQRWTE LLQGPSAATR EEIDWTTNEL RNNLRSIEWD  60
   61 LEDLDETISI VEANPRKFNL DATELSIRKA FITSTRQIVR DMKDQMSASS VQALAERKNR 120
  121 QALLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.30103
Match:	1lvfA
Description:	Syntaxin 6, SNAP-25 homolog
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [126-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSSSQSWNAG VADRYGRLDR ELQLANSHFI EEQQAQQQLI VEQQDEQLEL VSGSIGVLKN  60
   61 MSQRIGGELE EQAVMLDDFS HELESTQSRL DNVMKKLAKV SHMTSDRRQW CAIAILFAVL 120
  121 VVVLILFLVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	2npsD
Description:	No description for 2npsD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits