YRC Public Data Repository - Protein Structure Prediction

Protein:	MYOG_MOUSE
Organism:	Mus musculus
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYOG_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|21071082, gi\|... - gi\|3023093\|gb\|AAC12644.1\| myogenin [Rattus norvegicus], gi\|21071082\|ref\|NP_058811.2\| myogenin [Rattu...	219.0	[0..1]	[224..1]
gi\|93102313 - gi\|93102313\|dbj\|BAE93440.1\| myogenin [Bos taurus]	214.0	[0..1]	[224..1]
gi\|60097953, gi\|... - gi\|60097953\|ref\|NP_001012406.1\| myogenin [Sus scrofa], gi\|58531946\|gb\|AAW78688.1\| myogenin [Sus scro...	211.0	[0..1]	[224..1]
gi\|60653163, gi\|... - gi\|60653165\|gb\|AAX29277.1\| myogenin [synthetic construct], gi\|60653163\|gb\|AAX29276.1\| myogenin [synt...	207.0	[0..1]	[224..1]
MYOG - myogenin (myogenic factor 4) gi\|208966814, gi... - gi\|60656217\|gb\|AAX32672.1\| myogenin [synthetic construct], gi\|60656215\|gb\|AAX32671.1\| myogenin [synt...	207.0	[0..1]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELYETSPYF YQEPHFYDGE NYLPVHLQGF EPPGYERTEL SLSPEARGPL EEKGLGTPEH  60
   61 CPGQCLPWAC KVCK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.309804
Match:	PF01586.7
Description:	No description for PF01586.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKSVSVDRRR AATLREKRRL KKVNEAFEAL KRSTLLNPNQ RLPKVEILRS AIQYIERLQA  60
   61 LLSSLNQEER D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1mdyA
Description:	Myod B/HLH domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [146-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRYRGGGGPQ PMVPSECNSH SASCSPEWGN ALEFGPNPGD HLLAADPTDA HNLHSLTSIV  60
   61 DSITVEDMSV AFPDETMPN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.558	d.192.1	YlxR-like
View	Download	0.404	d.58.52	Description not found.
View	Download	0.363	a.60.8	HRDC-like
View	Download	0.323	d.58.14	Ribosomal protein S6
View	Download	0.300	a.60.8	HRDC-like
View	Download	0.289	d.58.52	Description not found.
View	Download	0.246	a.64.1	Saposin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits