YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109131553
Organism:	Macaca mulatta
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109131553.

Description	E-value	Query Range	Subject Range
TI8AB_MOUSE - Putative mitochondrial import inner membrane translocase subunit Tim8 A-B OS=Mus musculus GN=Timm8a2...	118.0	[0..1]	[97..1]
TIM8A_BOVIN - Mitochondrial import inner membrane translocase subunit Tim8 A OS=Bos taurus GN=TIMM8A PE=3 SV=1 gi\|57112261 - gi\|57112261\|ref\|XP_538107.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	115.0	[0..1]	[97..1]
gi\|76660354 - gi\|76660354\|ref\|XP_600831.2\| PREDICTED: similar to translocase of inner mitochondrial membrane 8 hom...	112.0	[0..11]	[97..12]
gi\|109072562 - gi\|109072562\|ref\|XP_001095067.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 8...	111.0	[0..9]	[97..51]
gi\|50745652 - gi\|50745652\|ref\|XP_420185.1\| PREDICTED: similar to X-linked deafness dystonia protein [Gallus gallus...	111.0	[0..4]	[97..1]
gi\|47682895 - gi\|47682895\|gb\|AAH70284.1\| Translocase of inner mitochondrial membrane 8 homolog A (yeast) [Homo sap...	110.0	[0..1]	[97..1]
TIM8A_RAT - Mitochondrial import inner membrane translocase subunit Tim8 A OS=Rattus norvegicus GN=Timm8a PE=1 S...	109.0	[0..1]	[97..1]
TIM8A_DANRE - Mitochondrial import inner membrane translocase subunit Tim8 A OS=Danio rerio GN=timm8a PE=3 SV=1	104.0	[0..14]	[97..7]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSSSSSAA GLGAVDPQLQ HFIEVETQKQ RFQQLVHQMT ELCWEKCMDK PGPKLDSRAE  60
   61 ACFVNCVERF IDTSQFILNR LEQTQKSKPV FSESLSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits