YRC Public Data Repository - Protein Structure Prediction

Protein:	RL362_ECOLI
Organism:	Escherichia coli
Length:	46 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL362_ECOLI.

Description	E-value	Query Range	Subject Range
MRPL36 - mitochondrial ribosomal protein L36 ENSPTRT00000031035 - null	65.0	[0..10]	[41..72]
gi\|108874294, gi... - gi\|157123746\|ref\|XP_001653874.1\| mitochondrial ribosomal protein, L36, putative [Aedes aegypti], gi\|...	65.0	[0..8]	[46..80]
gi\|30687686, gi\|... - gi\|30687686\|ref\|NP_850857.1\| ribosomal protein L36 family protein [Arabidopsis thaliana], gi\|2224240...	65.0	[0..1]	[41..1]
gi\|76673281 - gi\|76673281\|ref\|XP_580819.2\| PREDICTED: similar to rCG41937 [Bos taurus]	64.0	[0..10]	[41..117]
gi\|58387994, gi\|... - gi\|58387994\|ref\|XP_315957.2\| ENSANGP00000014147 [Anopheles gambiae str. PEST], gi\|55238739\|gb\|EAA116...	63.0	[0..8]	[44..69]
gi\|114327896, gi... - gi\|114327896\|ref\|YP_745053.1\| 50S ribosomal protein L36P [Granulibacter bethesdensis CGDNIH1], gi\|11...	61.0	[0..1]	[41..38]
gi\|220959306, gi... - gi\|220959306\|gb\|ACL92196.1\| mRpL36-PA [synthetic construct], gi\|220950322\|gb\|ACL87704.1\| mRpL36-PA [... mRpL36-PA - The gene mitochondrial ribosomal protein L36 is referred to in FlyBase by the symbol Dmel\mRpL36 (CG...	61.0	[0..8]	[44..74]

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Predicted Domain #1

Region A:
Residues: [1-46]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLNSLRTA KERHPDCQIV KRKGRLYVIC KSNPRFKAVQ GRKKKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits