YRC Public Data Repository - Protein Structure Prediction

Protein:	GPM6A_MOUSE
Organism:	Mus musculus
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPM6A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|49903711, gi\|... - gi\|49903711\|gb\|AAH75774.1\| Gpm6ab protein [Danio rerio], gi\|220678583\|emb\|CAX12666.1\| glycoprotein M...	432.0	[0..1]	[278..1]
gi\|123121339, gi... - gi\|9502119\|gb\|AAF87987.1\|AF254869_1 proteolipid M6B isoform alpha-TMD-omega [Mus musculus], gi\|74183... gi\|2143496, gi\|4... - gi\|425587\|gb\|AAB28351.1\| membrane glycoprotein M6 [Mus sp.], gi\|2143496\|pir\|\|I78556 membrane glycopr... gi\|149035879 - gi\|149035879\|gb\|EDL90546.1\| rCG49687, isoform CRA_g [Rattus norvegicus]	428.0	[0..2]	[278..10]
gi\|109129961 - gi\|109129961\|ref\|XP_001098542.1\| PREDICTED: glycoprotein M6B isoform 2 [Macaca mulatta] gi\|119619250 - gi\|119619250\|gb\|EAW98844.1\| glycoprotein M6B, isoform CRA_c [Homo sapiens]	427.0	[0..2]	[278..10]
GPM6B_MOUSE - Neuronal membrane glycoprotein M6-b OS=Mus musculus GN=Gpm6b PE=1 SV=2	424.0	[0..13]	[278..61]
gi\|55729321 - gi\|55729321\|emb\|CAH91395.1\| hypothetical protein [Pongo abelii] gi\|55729321\|emb\|... - hypothetical protein [Pongo pygmaeus]	424.0	[0..2]	[278..10]
gi\|76666271 - gi\|76666271\|ref\|XP_878222.1\| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform...	423.0	[0..2]	[278..6]
ENSPTRT00000040193 - null gi\|119619252, gi... - gi\|50263048\|ref\|NP_001001995.1\| glycoprotein M6B isoform 1 [Homo sapiens], gi\|21754964\|dbj\|BAC04600.... gi\|109129959 - gi\|109129959\|ref\|XP_001098446.1\| PREDICTED: glycoprotein M6B isoform 1 [Macaca mulatta] CCDS35206.1_1 - null	422.0	[0..13]	[278..61]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENMEEGQT QKGCFECCIK CLGGIPYASL IATILLYAGV ALFCGCGHEA LSGTVNILQT  60
   61 YFELARTAGD TLDVFTMIDI FKYVIYGIAA AFFVYGILLM VEGFFTTGAI KDLYGDFKIT 120
  121 TCGRCVSAWF IMLTYLFMLA WLGVTAFTSL PVYMYFNVWT ICRNTTLVEG ANLCLDLRQF 180
  181 GIVTIGEEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KICTASENFL RMCESTELNM TFHLFIVALA GAGAAVIAMV HYLMVLSANW AYVKDACRMQ  60
   61 KYEDIKSKEE QELHDIHSTR SKERLNAYT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits