YRC Public Data Repository - Protein Structure Prediction

Protein:	RAPZ_YERPA
Organism:	Yersinia pestis Antiqua
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAPZ_YERPA.

Description	E-value	Query Range	Subject Range
gi\|77630529, gi\|... - gi\|77630529\|ref\|ZP_00793115.1\| COG1660: Predicted P-loop-containing kinase [Yersinia pseudotuberculo... gi\|77633092 - gi\|77633092\|ref\|ZP_00795244.1\| COG1660: Predicted P-loop-containing kinase [Yersinia pestis Angola] gi\|89102221 - gi\|89102221\|ref\|ZP_01174872.1\| COG1660: Predicted P-loop-containing kinase [Yersinia pestis biovar O...	0.0	[1..284]	[20..303]
gi\|77963470 - gi\|77963470\|ref\|ZP_00827279.1\| COG1660: Predicted P-loop-containing kinase [Yersinia mollaretii ATCC...	0.0	[1..284]	[1..284]
RAPZ_YERE8 - RNase adapter protein RapZ OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 /... gi\|238793714, gi... - gi\|77978709\|ref\|ZP_00834134.1\| COG1660: Predicted P-loop-containing kinase [Yersinia intermedia ATCC...	0.0	[1..283]	[1..283]
gi\|77957484 - gi\|77957484\|ref\|ZP_00821539.1\| COG1660: Predicted P-loop-containing kinase [Yersinia bercovieri ATCC...	0.0	[1..284]	[1..284]
RAPZ_SALA4 - RNase adapter protein RapZ OS=Salmonella agona (strain SL483) GN=rapZ PE=3 SV=1 gi\|197241221, gi... - gi\|197262966\|ref\|ZP_03163040.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RAPZ_SALPK - RNase adapter protein RapZ OS=Salmonella paratyphi A (strain AKU_12601) GN=rapZ PE=3 SV=1 RAPZ_SALDC - RNase adapter protein RapZ OS=Salmonella dublin (strain CT_02021853) GN=rapZ PE=3 SV=1 RAPZ_SALNS - RNase adapter protein RapZ OS=Salmonella newport (strain SL254) GN=rapZ PE=3 SV=1 YHBJ_SALCH - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella choleraesuis GN=yhbJ PE=3 SV=1 RAPZ_SALHS - RNase adapter protein RapZ OS=Salmonella heidelberg (strain SL476) GN=rapZ PE=3 SV=1 gi\|194470337, gi... - gi\|194470337\|ref\|ZP_03076321.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RAPZ_SALSV - RNase adapter protein RapZ OS=Salmonella schwarzengrund (strain CVM19633) GN=rapZ PE=3 SV=1 gi\|205337879, gi... - gi\|205337879\|gb\|EDZ24643.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YHBJ_SALPB - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=y... gi\|205348469, gi... - gi\|205348469\|gb\|EDZ35100.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168463451, gi... - gi\|195633703\|gb\|EDX52117.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343424, gi... - gi\|205343424\|gb\|EDZ30188.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323223, gi... - gi\|205323223\|gb\|EDZ11062.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327648, gi... - gi\|205327648\|gb\|EDZ14412.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168231934, gi... - gi\|205333839\|gb\|EDZ20603.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289117, gi... - gi\|197289117\|gb\|EDY28486.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YHBJ_SALTY - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella typhimurium GN=yhbJ PE=3 SV=1 gi\|213053142 - gi\|213053142\|ref\|ZP_03346020.1\| hypothetical protein Salmoneentericaenterica_09585 [Salmonella enter... gi\|213426633 - gi\|213426633\|ref\|ZP_03359383.1\| hypothetical protein SentesTyphi_14088 [Salmonella enterica subsp. e... gi\|238910117 - gi\|238910117\|ref\|ZP_04653954.1\| hypothetical protein SentesTe_03125 [Salmonella enterica subsp. ente... YHBJ_SALPA - UPF0042 nucleotide-binding protein yhbJ OS=Salmonella paratyphi A GN=yhbJ PE=3 SV=1 RAPZ_SALPC - RNase adapter protein RapZ OS=Salmonella paratyphi C (strain RKS4594) GN=rapZ PE=3 SV=1 gi\|200387031, gi... - gi\|200387031\|ref\|ZP_03213643.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204319932, gi... - gi\|204931165\|ref\|ZP_03221959.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... RAPZ_SALG2 - RNase adapter protein RapZ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rapZ PE=3 SV=1 RAPZ_SALEP - RNase adapter protein RapZ OS=Salmonella enteritidis PT4 (strain P125109) GN=rapZ PE=3 SV=1 RAPZ_SALPB - RNase adapter protein RapZ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rapZ PE=3 SV=1 YHBJ_SALCH - UPF0042 protein yhbJ OS=Salmonella choleraesuis GN=yhbJ PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yhbJ] [protein=hypothetical protein] [protein_id=YP_005239503.1] [location=3500704..3501558] YHBJ_SALTY - UPF0042 protein yhbJ OS=Salmonella typhimurium GN=yhbJ PE=3 SV=1 RAPZ_SALPA - RNase adapter protein RapZ OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rapZ PE=3 SV=1 RAPZ_SALTY - RNase adapter protein RapZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rapZ P... RAPZ_SALCH - RNase adapter protein RapZ OS=Salmonella choleraesuis (strain SC-B67) GN=rapZ PE=3 SV=1	0.0	[1..283]	[1..283]
gi\|950055, gi\|21... - gi\|950055\|emb\|CAA90684.1\| orfIV [Klebsiella pneumoniae], pir\|\|S60666 probable ATP-binding protein - ... RAPZ_KLEOX - RNase adapter protein RapZ OS=Klebsiella oxytoca GN=rapZ PE=3 SV=3	0.0	[1..283]	[1..283]
Y285_ERWCT - UPF0042 nucleotide-binding protein ECA0285 OS=Erwinia carotovora subsp. atroseptica GN=ECA0285 PE=3 ... RAPZ_PECAS - RNase adapter protein RapZ OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rapZ ... RAPZ_PECCP - RNase adapter protein RapZ OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rapZ PE=... gi\|227114048 - gi\|227114048\|ref\|ZP_03827704.1\| hypothetical protein PcarbP_13829 [Pectobacterium carotovorum subsp.... gi\|227326627 - gi\|227326627\|ref\|ZP_03830651.1\| hypothetical protein PcarcW_04609 [Pectobacterium carotovorum subsp....	0.0	[1..283]	[1..283]
gi\|238789764, gi... - gi\|77973415\|ref\|ZP_00828963.1\| COG1660: Predicted P-loop-containing kinase [Yersinia frederiksenii A...	0.0	[1..283]	[1..283]
RAPZ_SHIDS - RNase adapter protein RapZ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rapZ PE=3 SV=1	0.0	[1..283]	[1..283]
YHBJ_SALTI - UPF0042 protein yhbJ OS=Salmonella typhi GN=yhbJ PE=3 SV=1 gi\|29139209, gi\|... - gi\|29143574\|ref\|NP_806916.1\| hypothetical protein t3240 [Salmonella enterica subsp. enterica serovar... gi\|16762085 - gi\|16762085\|ref\|NP_457702.1\| hypothetical protein STY3502 [Salmonella enterica subsp. enterica serov... gi\|213423743 - gi\|213423743\|ref\|ZP_03356723.1\| hypothetical protein Salmonentericaenterica_40408 [Salmonella enteri... gi\|213648724 - gi\|213648724\|ref\|ZP_03378777.1\| hypothetical protein SentesTy_16441 [Salmonella enterica subsp. ente... gi\|213857499 - gi\|213857499\|ref\|ZP_03384470.1\| hypothetical protein SentesT_20304 [Salmonella enterica subsp. enter... gi\|214000958 - gi\|214000958\|ref\|ZP_03411693.1\| hypothetical protein Salmonellentericaenterica_10496 [Salmonella ent... RAPZ_SALTI - RNase adapter protein RapZ OS=Salmonella typhi GN=rapZ PE=3 SV=1	0.0	[1..283]	[1..283]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLMIVSGRS GSGKSVALRA LEDMGFYCVD NLPVVLLPQL ASTLADRNIS AAVSIDVRNM  60
   61 PESPEVFEHA MTQLPDSFSP QLLFLDADRN TLIRRYSDTR RLHPLSAKNL SLESAIDEES 120
  121 DLLEPLRSRA DLIIDTSEMS VHELAEMLRT RLLG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.39
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.48172144551427	bayes_pls_golite062009
catalytic activity	0.942640875796745	bayes_pls_golite062009
nucleic acid binding	0.00977334280765782	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [155-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRERELTMVF ESFGFKHGIP IDADYVFDVR FLPNPHWDPK LRPMTGLDKP VISFLDRHTE  60
   61 VHNFIYQTRS YLEQWLPMLE TNNRSYLTVA IGCTGGKHRS VYVAEQLADY FRARGKNVQS 120
  121 RHRTLEKRKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.886057
Match:	PF03668.6
Description:	No description for PF03668.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.911	0.950	ATP binding	c.37.1	P-loop containing nucleoside triphosphate hydrolases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: