YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123999460, gi...
Organism:	synthetic construct
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123999460, gi....

Description	E-value	Query Range	Subject Range
gi\|220954288, gi... - gi\|220954288\|gb\|ACL89687.1\| mge-PA [synthetic construct], gi\|220944488\|gb\|ACL84787.1\| mge-PA [synthe... mge-PA - The gene maggie is referred to in FlyBase by the symbol Dmel\mge (CG14981, FBgn0035473). It is a pro...	3.0E-41	[3..139]	[14..145]
gi\|94400503 - gi\|94400503\|ref\|XP_920030.2\| PREDICTED: similar to TOM22 protein [Mus musculus]	8.0E-34	[12..142]	[90..220]
gi\|57091773 - gi\|57091773\|ref\|XP_548243.1\| PREDICTED: similar to Mitochondrial import receptor subunit TOM22 homol...	1.0E-33	[3..142]	[2..140]
gi\|62897603 - gi\|62897603\|dbj\|BAD96741.1\| mitochondrial import receptor Tom22 variant [Homo sapiens]	3.0E-32	[1..142]	[1..142]
TOM22_BOVIN - Mitochondrial import receptor subunit TOM22 homolog OS=Bos taurus GN=TOMM22 PE=2 SV=1	7.0E-32	[14..142]	[12..140]
gi\|54641166, gi\|... - gi\|54641166\|gb\|EAL29916.1\| GA13402 [Drosophila pseudoobscura pseudoobscura], gi\|125976774\|ref\|XP_001... gi\|54641166\|gb\|E... - GA13402-PA [Drosophila pseudoobscura], GA13402 [Drosophila pseudoobscura pseudoobscura]	9.0E-32	[3..139]	[14..150]
gi\|109132169 - gi\|109132169\|ref\|XP_001088426.1\| PREDICTED: similar to Mitochondrial import receptor subunit TOM22 h...	9.0E-32	[1..142]	[1..142]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVAAAGA GEPQSPDELL PKGDAEKPEE ELEEDDDEEL DETLSERLWG LTEMFPERVR  60
   61 SAAGATFDLS LFVAQKMYRF SRAALWIGTT SFMILVLPVV FETEKLQMEQ QQQLQQRQIL 120
  121 LGPNTGLSGG MPGALPSLPG KI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits