YRC Public Data Repository - Protein Structure Prediction

Protein:	OSTC_RAT
Organism:	Rattus norvegicus
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OSTC_RAT.

Description	E-value	Query Range	Subject Range
gi\|73945996 - gi\|73945996\|ref\|XP_533408.2\| PREDICTED: similar to DC2 protein [Canis familiaris]	271.0	[0..1]	[149..49]
gi\|6841264 - gi\|6841264\|gb\|AAF28985.1\|AF161425_1 HSPC307 [Homo sapiens]	262.0	[0..1]	[149..19]
gi\|26378096 - gi\|26378096\|dbj\|BAB28595.2\| unnamed protein product [Mus musculus]	260.0	[0..1]	[149..9]
OSTC_XENTR - Oligosaccharyltransferase complex subunit ostc OS=Xenopus tropicalis GN=ostc PE=2 SV=1	257.0	[0..1]	[149..1]
OSTCA_XENLA - Oligosaccharyltransferase complex subunit ostc-A OS=Xenopus laevis GN=ostc-a PE=2 SV=1	257.0	[0..1]	[149..1]
OSTC_BOVIN - Oligosaccharyltransferase complex subunit OSTC OS=Bos taurus GN=OSTC PE=2 SV=1	256.0	[0..1]	[149..1]
gi\|114595610 - gi\|114595610\|ref\|XP_001136885.1\| PREDICTED: DC2 protein isoform 1 [Pan troglodytes]	254.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLYRVPFL VLECPNLKLK KPPWVHMPSA MTVYALVVVS YFLITGGIIY DVIVEPPSVG  60
   61 SMTDEHGHQR PVAFLAYRVN GQYIMEGLAS SFLFTMGGLG FIILDRSNAP NIPKLNRFLL 120
  121 LFIGFVCVLL SFFMARVFMR MKLPGYLMG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits