YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110344542, gi...
Organism:	Escherichia coli 536
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110344542, gi....

Description	E-value	Query Range	Subject Range
gi\|75175507 - gi\|75175507\|ref\|ZP_00695725.1\| hypothetical protein SboyB_01004460 [Shigella boydii BS512] gi\|75187537 - gi\|75187537\|ref\|ZP_00700804.1\| hypothetical protein EcolE_01000768 [Escherichia coli E24377A] gi\|83584769 - gi\|83584769\|ref\|ZP_00923431.1\| hypothetical protein Ecol1_01004001 [Escherichia coli 101-1] gi\|227888351, gi... - gi\|227888351\|ref\|ZP_04006156.1\| lipoprotein [Escherichia coli 83972], gi\|227834620\|gb\|EEJ45086.1\| li... gi\|226899599, gi... - gi\|237706559\|ref\|ZP_04537040.1\| lipoprotein ygdI [Escherichia sp. 3_2_53FAA], gi\|226899599\|gb\|EEH858... gi\|254037863, gi... - gi\|254037863\|ref\|ZP_04871921.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683948... gi\|209761198, gi... - gi\|882704\|gb\|AAB40459.1\| ORF_f76, pir\|\|E65063 hypothetical protein b2809 - Escherichia coli (strain ... gi\|26249215, gi\|... - gi\|26249215\|ref\|NP_755255.1\| lipoprotein ygdI precursor [Escherichia coli CFT073], gi\|26109622\|gb\|AA... gi\|82778188, gi\|... - gi\|82778188\|ref\|YP_404537.1\| hypothetical protein SDY_3027 [Shigella dysenteriae Sd197], gi\|81242336... gi\|82545107, gi\|... - gi\|82545107\|ref\|YP_409054.1\| hypothetical protein SBO_2692 [Shigella boydii Sb227], gi\|81246518\|gb\|A... gi\|13363141, gi\|... - gi\|15832923\|ref\|NP_311696.1\| hypothetical protein ECs3669 [Escherichia coli O157:H7], gi\|13363141\|db... gi\|1789174, gi\|1... - gb\|AAC75851.1\| orf, hypothetical protein; unknown CDS [Escherichia coli K12], gi\|16130716\|ref\|NP_41... gi\|882704\|gb\|AAB... - ORF_f76 gi\|75215046, gi\|... - gi\|75215046\|ref\|ZP_00713506.1\| hypothetical protein EcolE1_01004348 [Escherichia coli E110019], gi\|1... gi\|75227275, gi\|... - gi\|75227275\|ref\|ZP_00714068.1\| hypothetical protein EcolB7_01004292 [Escherichia coli B7A], gi\|19116... gi\|75196780 - gi\|75196780\|ref\|ZP_00706850.1\| hypothetical protein EcolH_01002592 [Escherichia coli HS] gi\|75212571 - gi\|75212571\|ref\|ZP_00712595.1\| hypothetical protein EcolB_01000658 [Escherichia coli B171] gi\|75511952 - gi\|75511952\|ref\|ZP_00734555.1\| hypothetical protein Ecol5_01003822 [Escherichia coli 53638] gi\|91212179, gi\|... - gi\|91212179\|ref\|YP_542165.1\| hypothetical protein UTI89_C3182 [Escherichia coli UTI89], gi\|91073753\|... gi\|74313380, gi\|... - gi\|74313380\|ref\|YP_311799.1\| hypothetical protein SSON_2966 [Shigella sonnei Ss046], gi\|73856857\|gb\|... gi\|13363141, gi\|... - gi\|15832923\|ref\|NP_311696.1\| hypothetical protein ECs3669 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|75241800 - gi\|75241800\|ref\|ZP_00725619.1\| hypothetical protein EcolF_01001160 [Escherichia coli F11] gi\|194416892, gi... - gi\|194434873\|ref\|ZP_03067120.1\| putative lipoprotein [Shigella dysenteriae 1012], gi\|194416892\|gb\|ED... gi\|75256852 - gi\|75256852\|ref\|ZP_00728446.1\| hypothetical protein EcolE2_01003272 [Escherichia coli E22]	113.0	[0..1]	[75..2]
gi\|214003289 - gi\|214003289\|ref\|ZP_03414024.1\| hypothetical protein Salmonellentericaenterica_24731 [Salmonella ent... gi\|224469300, gi... - gi\|224584773\|ref\|YP_002638571.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|213583189 - gi\|213583189\|ref\|ZP_03365015.1\| hypothetical protein SentesTyph_19063 [Salmonella enterica subsp. en... gi\|213622673 - gi\|213622673\|ref\|ZP_03375456.1\| hypothetical protein SentesTyp_36251 [Salmonella enterica subsp. ent... gi\|213649826 - gi\|213649826\|ref\|ZP_03379879.1\| hypothetical protein SentesTy_22619 [Salmonella enterica subsp. ente... gi\|213857810 - gi\|213857810\|ref\|ZP_03384781.1\| hypothetical protein SentesT_22105 [Salmonella enterica subsp. enter... gi\|213028691 - gi\|213028691\|ref\|ZP_03343138.1\| hypothetical protein Salmonelentericaenterica_43218 [Salmonella ente... gi\|213052970 - gi\|213052970\|ref\|ZP_03345848.1\| hypothetical protein Salmoneentericaenterica_08653 [Salmonella enter... gi\|213416506 - gi\|213416506\|ref\|ZP_03349650.1\| hypothetical protein Salmonentericaenterica_00324 [Salmonella enteri... gi\|213424887 - gi\|213424887\|ref\|ZP_03357637.1\| hypothetical protein SentesTyphi_03776 [Salmonella enterica subsp. e... gi\|205337967, gi... - gi\|205359147\|ref\|ZP_02667683.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar He... gi\|205342875, gi... - gi\|205359797\|ref\|ZP_02832291.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar We... gi\|205360489, gi... - gi\|205360489\|ref\|ZP_02683839.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ha... gi\|207858248, gi... - gi\|207858248\|ref\|YP_002244899.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|29138878, gi\|... - gi\|29143245\|ref\|NP_806587.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2... gi\|16761761 - gi\|16761761\|ref\|NP_457378.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. CT1... gi\|16504063, gi\|... - gi\|25513393\|pir\|\|AI0863 probable lipoprotein [imported] - Salmonella enterica subsp. enterica serova... gi\|16766287, gi\|... - gi\|16766287\|ref\|NP_461902.1\| putative lipoprotein [Salmonella typhimurium LT2], gi\|16421533\|gb\|AAL21... gi\|238909762 - gi\|238909762\|ref\|ZP_04653599.1\| hypothetical protein SentesTe_01330 [Salmonella enterica subsp. ente... gi\|205273706, gi... - gi\|205353925\|ref\|YP_002227726.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|205324812, gi... - gi\|205357000\|ref\|ZP_02343901.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|205328456, gi... - gi\|205357972\|ref\|ZP_02574575.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar 4,... gi\|205358414, gi... - gi\|205358414\|ref\|ZP_02656136.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ke... gi\|197095337, gi... - gi\|197363860\|ref\|YP_002143497.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|198243268, gi... - gi\|198243268\|ref\|YP_002216959.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar D... gi\|199604049, gi... - gi\|200386951\|ref\|ZP_03213563.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Vi... gi\|204322715, gi... - gi\|204928393\|ref\|ZP_03219593.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ja... gi\|195633650, gi... - gi\|195873625\|ref\|ZP_02697778.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ne... gi\|197251729, gi... - gi\|197251729\|ref\|YP_002147895.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar A... gi\|197242035, gi... - gi\|197263780\|ref\|ZP_03163854.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|197300785, gi... - gi\|197300785\|ref\|ZP_02661093.2\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sc... gi\|194404307, gi... - gi\|194445644\|ref\|YP_002042235.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar N... gi\|62181493, gi\|... - gi\|62181493\|ref\|YP_217910.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Chole... gi\|194450696, gi... - gi\|194450696\|ref\|YP_002046955.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar H... lcl\|NC_016856.1_... - [gene=ygdI] [protein=putative lipoprotein] [protein_id=YP_005239104.1] [location=complement(3155345.... gi\|56414932, gi\|... - gi\|56414932\|ref\|YP_152007.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A st... gi\|194469247, gi... - gi\|194469247\|ref\|ZP_03075231.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ke... gi\|194736466, gi... - gi\|194736466\|ref\|YP_002115936.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar S...	112.0	[0..1]	[74..1]
gi\|110806749, gi... - gi\|110806749\|ref\|YP_690269.1\| hypothetical protein SFV_2888 [Shigella flexneri 5 str. 8401], gi\|1106...	112.0	[0..1]	[75..1]
gi\|24053224, gi\|... - gi\|24114093\|ref\|NP_708603.1\| hypothetical protein SF2823 [Shigella flexneri 2a str. 301], gi\|2405322... gi\|30042410, gi\|... - gi\|30064154\|ref\|NP_838325.1\| hypothetical protein S3018 [Shigella flexneri 2a str. 2457T], gi\|300424...	111.0	[0..1]	[75..2]
gi\|15803331, gi\|... - gi\|15803331\|ref\|NP_289364.1\| hypothetical protein Z4126 [Escherichia coli O157:H7 EDL933], gi\|125172... gi\|25500318 - pir\|\|G85932 hypothetical protein Z4126 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	109.0	[0..1]	[75..2]
gi\|238909785 - gi\|238909785\|ref\|ZP_04653622.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar Te... lcl\|NC_016856.1_... - [gene=ygdR] [protein=putative peptide transport protein] [protein_id=YP_005239135.1] [location=31849... gi\|16421557, gi\|... - gi\|16766309\|ref\|NP_461924.1\| putative peptide transport protein [Salmonella typhimurium LT2], gi\|164... gi\|168261838, gi... - gi\|205349040\|gb\|EDZ35671.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|195633569, gi... - gi\|195633569\|gb\|EDX51983.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|197290796, gi... - gi\|197290796\|gb\|EDY30150.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205338169, gi... - gi\|205338169\|gb\|EDZ24933.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|167993508, gi... - gi\|205328476\|gb\|EDZ15240.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|168231106, gi... - gi\|205334525\|gb\|EDZ21289.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|161365309, gi... - gi\|161615945\|ref\|YP_001589910.1\| hypothetical protein SPAB_03742 [Salmonella enterica subsp. enteric... gi\|167550116, gi... - gi\|205324706\|gb\|EDZ12545.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|207858270, gi... - gi\|207858270\|ref\|YP_002244921.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|224469323, gi... - gi\|224584796\|ref\|YP_002638594.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|204928254, gi... - gi\|204928254\|ref\|ZP_03219454.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205273728, gi... - gi\|205353947\|ref\|YP_002227748.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|198242598, gi... - gi\|198242598\|ref\|YP_002216981.1\| hypothetical protein SeD_A3335 [Salmonella enterica subsp. enterica... gi\|200387062, gi... - gi\|200387062\|ref\|ZP_03213674.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197240057, gi... - gi\|197261802\|ref\|ZP_03161876.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197095360, gi... - gi\|197363883\|ref\|YP_002143520.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|194738056, gi... - gi\|194738056\|ref\|YP_002115958.1\| hypothetical protein SeSA_A3172 [Salmonella enterica subsp. enteric... gi\|197211878, gi... - gi\|197248175\|ref\|YP_002147916.1\| hypothetical protein SeAg_B3154 [Salmonella enterica subsp. enteric... gi\|62129149, gi\|... - gi\|62181516\|ref\|YP_217933.1\| POT family peptide transport protein [Salmonella enterica subsp. enteri... gi\|194449686, gi... - gi\|194449686\|ref\|YP_002046977.1\| hypothetical protein SeHA_C3220 [Salmonella enterica subsp. enteric... gi\|194456262, gi... - gi\|194469898\|ref\|ZP_03075882.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205342922, gi... - gi\|205342922\|gb\|EDZ29686.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|56414954, gi\|... - gi\|56414954\|ref\|YP_152029.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A st... gi\|194401264, gi... - gi\|194442601\|ref\|YP_002042257.1\| hypothetical protein SNSL254_A3235 [Salmonella enterica subsp. ente...	102.0	[0..1]	[72..1]
gi\|77460184, gi\|... - gi\|77460184\|ref\|YP_349691.1\| hypothetical protein Pfl01_3963 [Pseudomonas fluorescens Pf0-1], gi\|773...	101.0	[0..2]	[73..3]
gi\|77972694 - gi\|77972694\|ref\|ZP_00828253.1\| hypothetical protein YfreA_01003476 [Yersinia frederiksenii ATCC 3364...	100.0	[0..1]	[72..1]
gi\|95112455, gi\|... - gi\|95112455\|emb\|CAK17182.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047834... gi\|95112455 - gi\|95112455\|emb\|CAK17182.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	100.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTAAIISA CMLTFALSAC SGSNYVMHTN DGRTIVSDGK PQTDNDTGMI SYKDANGNKQ  60
   61 QINRTDVKEM VELDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.09691
Match:	2ra2A
Description:	No description for 2ra2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits