YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110806395, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110806395, gi....

Description	E-value	Query Range	Subject Range
gi\|91211791, gi\|... - gi\|91211791\|ref\|YP_541777.1\| ethanolamine utilization protein EutS [Escherichia coli UTI89], gi\|9107... gi\|226901342, gi... - gi\|237704976\|ref\|ZP_04535457.1\| ethanolamine utilization protein EutS [Escherichia sp. 3_2_53FAA], g...	248.0	[0..1]	[135..1]
gi\|82544911, gi\|... - gi\|82544911\|ref\|YP_408858.1\| hypothetical protein SBO_2477 [Shigella boydii Sb227], gi\|81246322\|gb\|A...	247.0	[0..1]	[135..1]
gi\|74312987, gi\|... - gi\|74312987\|ref\|YP_311406.1\| hypothetical protein SSON_2542 [Shigella sonnei Ss046], gi\|73856464\|gb\|...	243.0	[0..1]	[135..1]
gi\|191167622, gi... - gi\|75229216\|ref\|ZP_00715784.1\| COG4810: Ethanolamine utilization protein [Escherichia coli B7A], gi\|... gi\|192958375, gi... - gi\|75237795\|ref\|ZP_00721811.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E110019],... gi\|75240111, gi\|... - gi\|75240111\|ref\|ZP_00724070.1\| COG4810: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|193064775, gi... - gi\|75257265\|ref\|ZP_00728789.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E22], gi\|... gi\|75515798 - gi\|75515798\|ref\|ZP_00737933.1\| COG4810: Ethanolamine utilization protein [Escherichia coli 53638] gi\|85675413, gi\|... - gi\|89109267\|ref\|AP_003047.1\| predicted carboxysome structural protein with predicted role in ethanol... gi\|83570676, gi\|... - gi\|83570676\|ref\|ZP_00922119.1\| COG4810: Ethanolamine utilization protein [Shigella dysenteriae 1012]... gi\|194437662, gi... - gi\|83586890\|ref\|ZP_00925521.1\| COG4810: Ethanolamine utilization protein [Escherichia coli 101-1], g... gi\|75187206 - gi\|75187206\|ref\|ZP_00700473.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E24377A] gi\|75196467 - gi\|75196467\|ref\|ZP_00706537.1\| COG4810: Ethanolamine utilization protein [Escherichia coli HS] gi\|194414579, gi... - gi\|75211423\|ref\|ZP_00711513.1\| COG4810: Ethanolamine utilization protein [Escherichia coli B171], gi... EUTS_SHIFL - Ethanolamine utilization protein EutS OS=Shigella flexneri GN=eutS PE=3 SV=1 gi\|38704088 - gi\|38704088\|ref\|NP_311351.2\| hypothetical protein ECs3324 [Escherichia coli O157:H7 str. Sakai] gi\|110642634, gi... - gi\|110642634\|ref\|YP_670364.1\| ethanolamine utilization protein EutS [Escherichia coli 536], gi\|11034... EUTS_ECOLI - Ethanolamine utilization protein eutS - Escherichia coli EUTS_ECOL6 - Ethanolamine utilization protein EutS OS=Escherichia coli O6 GN=eutS PE=3 SV=1 EUTS_ECOL6 - Ethanolamine utilization protein EutS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)... gi\|38704088 - gi\|38704088\|ref\|NP_311351.2\| hypothetical protein ECs3324 [Escherichia coli O157:H7] EG14192 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme... gi\|189368361, gi... - gi\|189368361\|gb\|EDU86777.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|168756224, gi... - gi\|189356558\|gb\|EDU74977.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|227835848, gi... - gi\|227887498\|ref\|ZP_04005303.1\| ethanolamine utilization protein EutS [Escherichia coli 83972], gi\|2... gi\|187770694, gi... - gi\|187770694\|gb\|EDU34538.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|238901625, gi... - gi\|238901625\|ref\|YP_002927421.1\| putative carboxysome structural protein with putative role in ethan... gi\|168768544, gi... - gi\|189362229\|gb\|EDU80648.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|251785788, gi... - gi\|251785788\|ref\|YP_003000092.1\| hypothetical protein B21_02315 [Escherichia coli BL21], gi\|24237806... gi\|253772647, gi... - gi\|254289197\|ref\|YP_003054945.1\| predicted carboxysome structural protein with predicted role in eth... gi\|168787798, gi... - gi\|189372251\|gb\|EDU90667.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC8... gi\|253974337, gi... - gi\|254162436\|ref\|YP_003045544.1\| predicted carboxysome structural protein with predicted role in eth... gi\|168778418, gi... - gi\|189003156\|gb\|EDU72142.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|169754182, gi... - gi\|170019254\|ref\|YP_001724208.1\| microcompartments protein [Escherichia coli ATCC 8739], gi\|16975418... gi\|254794406, gi... - gi\|254794406\|ref\|YP_003079243.1\| predicted carboxysome structural protein with predicted role in eth... gi\|189378595, gi... - gi\|189378595\|gb\|EDU97011.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC5... gi\|188017045, gi... - gi\|188017045\|gb\|EDU55167.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|218548105, gi... - gi\|218548105\|ref\|YP_002381896.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|217319239, gi... - gi\|217326872\|ref\|ZP_03442955.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... gi\|218428152, gi... - gi\|218690588\|ref\|YP_002398800.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|218554985, gi... - gi\|218554985\|ref\|YP_002387898.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|218370904, gi... - gi\|218700918\|ref\|YP_002408547.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|218352820, gi... - gi\|218696088\|ref\|YP_002403755.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|170684283, gi... - gi\|170684283\|ref\|YP_001744644.1\| ethanolamine utilization protein EutS [Escherichia coli SMS-3-5], g... gi\|170082071, gi... - gi\|170082071\|ref\|YP_001731391.1\| carboxysome structural protein with role in ethanol utilization [Es... gi\|208727000, gi... - gi\|208807199\|ref\|ZP_03249536.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... gi\|195936603 - gi\|195936603\|ref\|ZP_03081985.1\| hypothetical protein EscherichcoliO157_09105 [Escherichia coli O157:... gi\|208821425, gi... - gi\|208821425\|ref\|ZP_03261745.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... gi\|124499634, gi... - gi\|124529774\|ref\|ZP_01700651.1\| microcompartments protein [Escherichia coli B], gi\|124499634\|gb\|EAY4... gi\|208734585, gi... - gi\|208813308\|ref\|ZP_03254637.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... EG14192 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme... gi\|215265835, gi... - gi\|215487763\|ref\|YP_002330194.1\| predicted carboxysome structural protein with predicted role in eth... gi\|209397456, gi... - gi\|209397456\|ref\|YP_002271930.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str...	197.0	[0..25]	[135..1]
gi\|218559397, gi... - gi\|218559397\|ref\|YP_002392310.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|115513782, gi... - gi\|117624658\|ref\|YP_853571.1\| ethanolamine utilization protein EutS [Escherichia coli APEC O1], gi\|1...	196.0	[0..25]	[135..1]
gi\|213424330 - gi\|213424330\|ref\|ZP_03357162.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|213622597 - gi\|213622597\|ref\|ZP_03375380.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|213650240 - gi\|213650240\|ref\|ZP_03380293.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|213850223 - gi\|213850223\|ref\|ZP_03381121.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|29136541, gi\|... - gi\|29140916\|ref\|NP_804258.1\| putative ethanolamine utilization protein EutS [Salmonella enterica sub... gi\|205273356, gi... - gi\|205353575\|ref\|YP_002227376.1\| putative ethanolamine utilization protein EutS [Salmonella enterica... EUTS_SALTY - Ethanolamine utilization protein EutS OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720... gi\|206709685, gi... - gi\|207857882\|ref\|YP_002244533.1\| putative ethanolamine utilization protein EutS [Salmonella enterica... gi\|213051476 - gi\|213051476\|ref\|ZP_03344354.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|213423912 - gi\|213423912\|ref\|ZP_03356892.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|197361581, gi... - gi\|197361581\|ref\|YP_002141217.1\| putative ethanolamine utilization protein EutS [Salmonella enterica... gi\|197939959, gi... - gi\|198245443\|ref\|YP_002216538.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. e... gi\|200388075, gi... - gi\|200388075\|ref\|ZP_03214687.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. en... gi\|204321409, gi... - gi\|204929690\|ref\|ZP_03220764.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. en... gi\|194471439, gi... - gi\|194471439\|ref\|ZP_03077423.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. en... gi\|194735400, gi... - gi\|194735400\|ref\|YP_002115533.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. e... gi\|197251761, gi... - gi\|197251761\|ref\|YP_002147423.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. e... gi\|238912885 - gi\|238912885\|ref\|ZP_04656722.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|197242728, gi... - gi\|197264473\|ref\|ZP_03164547.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. en... EUTS_SALTY - Ethanolamine utilization protein eutS OS=Salmonella typhimurium GN=eutS PE=3 SV=1 gi\|213982278 - gi\|213982278\|ref\|ZP_03409537.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|214003397 - gi\|214003397\|ref\|ZP_03414132.1\| putative ethanolamine utilization protein EutS [Salmonella enterica ... gi\|224582998, gi... - gi\|224582998\|ref\|YP_002636796.1\| putative ethanolamine utilization protein EutS [Salmonella enterica... EUTS_SALTY - Ethanolamine utilization protein EutS OS=Salmonella typhimurium GN=eutS PE=3 SV=1 gi\|168466789, gi... - gi\|195630830\|gb\|EDX49422.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... gi\|62128669, gi\|... - gi\|62181036\|ref\|YP_217453.1\| putative carboxysome structural protein, ethanol utilization [Salmonell... gi\|168817781, gi... - gi\|205345068\|gb\|EDZ31832.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=eutS] [protein=putative carboxysome structural protein] [protein_id=YP_005238556.1] [location=... gi\|56412646, gi\|... - gi\|56412646\|ref\|YP_149721.1\| putative ethanolamine utilization protein EutS [Salmonella enterica sub... gi\|194403484, gi... - gi\|194444821\|ref\|YP_002041729.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. e... gi\|194406635, gi... - gi\|194448331\|ref\|YP_002046534.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. e... gi\|205333602, gi... - gi\|205333602\|gb\|EDZ20366.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... gi\|168238226, gi... - gi\|197288928\|gb\|EDY28301.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... gi\|168243240, gi... - gi\|205337619\|gb\|EDZ24383.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... gi\|205349613, gi... - gi\|205349613\|gb\|EDZ36244.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... gi\|160863727, gi... - gi\|161502380\|ref\|YP_001569492.1\| hypothetical protein SARI_00414 [Salmonella enterica subsp. arizona... gi\|161362147, gi... - gi\|161612783\|ref\|YP_001586748.1\| hypothetical protein SPAB_00482 [Salmonella enterica subsp. enteric... gi\|205325289, gi... - gi\|205325289\|gb\|EDZ13128.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri... gi\|167991769, gi... - gi\|205329938\|gb\|EDZ16702.1\| ethanolamine utilization protein EutS [Salmonella enterica subsp. enteri...	195.0	[0..25]	[135..1]
gi\|28203564, gi\|... - gi\|28211124\|ref\|NP_782068.1\| ethanolamine utilization protein eutS [Clostridium tetani E88], gi\|2820...	194.0	[0..19]	[135..4]
gi\|75178055 - gi\|75178055\|ref\|ZP_00698114.1\| COG4810: Ethanolamine utilization protein [Shigella boydii BS512]	193.0	[0..25]	[135..1]
gi\|16761387 - gi\|16761387\|ref\|NP_457004.1\| putative ethanolamine utilization protein EutS [Salmonella enterica sub... EUTS_SALTI - Ethanolamine utilization protein EutS OS=Salmonella typhi GN=eutS PE=3 SV=1 EUTS_SALTI - Ethanolamine utilization protein eutS OS=Salmonella typhi GN=eutS PE=3 SV=1	191.0	[0..25]	[135..1]
gi\|126699518, gi... - gi\|126699518\|ref\|YP_001088415.1\| putative ethanolamine/propanediol utilization protein [Clostridium ... gi\|255306898 - gi\|255306898\|ref\|ZP_05351069.1\| putative ethanolamine/propanediol utilization protein [Clostridium d... gi\|255101034 - gi\|255101034\|ref\|ZP_05330011.1\| putative ethanolamine/propanediol utilization protein [Clostridium d...	191.0	[0..25]	[135..4]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNFVIYSDE KLSRYTKVFH RRRLMDKERI IQEFVPGKQV TLAHLIAHPG EELAKKIGVP  60
   61 DAGAIGIMTL TPGETAMIAG DLALKAADVH IGFLDRFSGA LVIYGSVGAV EEALSQTVSG 120
  121 LGRLLNYTLC EMTKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.07
Match:	2a10A
Description:	carboxysome shell protein ccmK4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits