YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|94388500, gi\|...
Organism:	Mus musculus
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94388500, gi|....

Description	E-value	Query Range	Subject Range
TAF10_MOUSE - Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1	266.0	[0..1]	[218..1]
gi\|73988322 - gi\|73988322\|ref\|XP_542454.2\| PREDICTED: similar to Transcription initiation factor TFIID subunit 10 ...	246.0	[0..1]	[218..1]
gi\|76635972, gi\|... - gi\|76635972\|ref\|XP_884376.1\| PREDICTED: similar to TAF10 RNA polymerase II, TATA box binding protein...	235.0	[0..1]	[218..1]
gi\|109107476 - gi\|109107476\|ref\|XP_001109210.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit...	234.0	[0..1]	[218..1]
gi\|61363275, gi\|... - gi\|61363578\|gb\|AAX42413.1\| TAF10 RNA polymerase II TATA box binding protein-associated factor [synth... TAF10 - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa	234.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCSGFGADP EAAPACAALV AGPAPPVSAP PALPTSTAAE SKASPAGTAG GPVAGVATAG  60
   61 TGPVVARAGE PAELRGPASV AAGGVAPPEG AMSNGVYVLP SAAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEVKPVVSST PLVDFLMQLE DYTPTIPDAV TGYYLNRAGF EASDPRIIRL ISLAAQKFIS  60
   61 DIANDALQRC KMKGTASGSS RSKSKDRKYT LTMEDLTPAL SEYGINVKKP HYFT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.408935
Match:	PF03540.4
Description:	No description for PF03540.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits