YRC Public Data Repository - Protein Structure Prediction

Protein:	SFT2B_MOUSE
Organism:	Mus musculus
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFT2B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|6594627 - gi\|6594627\|gb\|AAF18564.1\| pRGR1 [Homo sapiens]	183.0	[0..1]	[159..20]
gi\|50741704 - gi\|50741704\|ref\|XP_419612.1\| PREDICTED: similar to chromosome 6 open reading frame 83; similar to RI...	178.0	[0..1]	[157..1]
gi\|66910819, gi\|... - gi\|66910819\|gb\|AAH97797.1\| MGC115508 protein [Xenopus laevis], gi\|148231877\|ref\|NP_001090049.1\| SFT2...	173.0	[0..1]	[159..1]
gi\|89273761, gi\|... - gi\|89273761\|emb\|CAJ81916.1\| novel protein similar to human chromosome 6 open reading frame 83 [Xenop...	172.0	[0..1]	[159..1]
gi\|114610192 - gi\|114610192\|ref\|XP_518851.2\| PREDICTED: SFT2 domain containing 1 [Pan troglodytes]	172.0	[0..1]	[159..1]
gi\|77736049, gi\|... - gi\|77736049\|ref\|NP_001029723.1\| SFT2 domain containing 2 [Bos taurus], gi\|74353835\|gb\|AAI03332.1\| SF...	172.0	[0..1]	[159..1]
gi\|109019396 - gi\|109019396\|ref\|XP_001092638.1\| PREDICTED: similar to SFT2 domain containing 2 [Macaca mulatta]	171.0	[0..1]	[159..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLKKVLSG QDTEDRSGLS EVVEASSLSW GTRIKGFIAC FALGILCSVL GTLLLWVPRK  60
   61 GLGLFAVFYT LGNIMSIGST VFLMGPLKQL KRMFEPTRLI ATILVLLCFA LTLCSAFLWN 120
  121 KGLALIFCIL QSLALTWYSL SYIPYARDAV KKCFAVCLA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.657577
Match:	PF07770.3
Description:	No description for PF07770.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits