YRC Public Data Repository - Protein Structure Prediction

Protein:	VDAC3_MOUSE
Organism:	Mus musculus
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114619980 - gi\|114619980\|ref\|XP_001138480.1\| PREDICTED: similar to voltage dependent anion channel form 3 [Pan t...	374.0	[0..1]	[283..288]
ENSPTRT00000004999 - null gi\|55664663, gi\|... - gi\|57209203\|emb\|CAI40914.1\| voltage-dependent anion channel 2 [Homo sapiens], gi\|55664663\|emb\|CAH731...	362.0	[0..1]	[283..27]
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	361.0	[0..1]	[283..13]
gi\|73953097, gi\|... - gi\|73953097\|ref\|XP_536398.2\| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1 [Cani...	360.0	[0..1]	[283..12]
VDAC2_PIG - Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1	360.0	[0..1]	[283..12]
VDAC2_RABIT - Voltage-dependent anion-selective channel protein 2 OS=Oryctolagus cuniculus GN=VDAC2 PE=2 SV=1 POR2_BOVIN - (P68002) Voltage-dependent anion-selective channel protein 2 (Outer mitochondrial membrane protein p...	359.0	[0..1]	[283..12]
VDAC2_BOVIN - Voltage-dependent anion-selective channel protein 2 OS=Bos taurus GN=VDAC2 PE=2 SV=2	359.0	[0..1]	[283..12]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCNTPTYCDL GKAAKDVFNK GYGFGMVKID LKTKSCSGVE FSTSGHAYTD TGKASGNLET  60
   61 KYKVCNYGLT FTQKWNTDNT LGTEISWENK LAEGLKLTLD TIFVPNTGKK SGKLKASYRR 120
  121 DCFSLGSNVD IDFSG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.431798
Match:	PF01459.13
Description:	No description for PF01459.13 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.800	0.893	learning	d.93.1	SH2 domain

Predicted Domain #2

Region A:
Residues: [136-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTIYGWAVLA FEGWLAGYQM SFDTAKSKLS QNNFALGYKA ADFQLHTHVN DGTEFGGSIY  60
   61 QKVNERIETS INLAWTAGSN NTRFGIAAKY KLDCRTSLSA KVNNASLIGL GYTQTLRPGV 120
  121 KLTLSALIDG KNFNAGGHKV GLGFELEA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2ervA
Description:	No description for 2ervA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits