YRC Public Data Repository - Protein Structure Prediction

Protein:	VDAC2_MOUSE
Organism:	Mus musculus
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|37514858 - gi\|37514858\|gb\|AAH03731.2\| Voltage-dependent anion channel 2 [Mus musculus]	389.0	[0..1]	[295..1]
VDAC2_RAT - Voltage-dependent anion-selective channel protein 2 OS=Rattus norvegicus GN=Vdac2 PE=1 SV=2	384.0	[0..1]	[295..1]
gi\|540011 - pir\|\|A38102 voltage-dependent anion channel-like protein - rat gi\|299036 - gi\|299036\|gb\|AAB26053.1\| B-36 VDAC=36 kda voltage dependent anion channel [rats, hippocampus, Peptid...	382.0	[0..1]	[295..1]
VDAC2_PIG - Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1	377.0	[0..8]	[295..7]
VDAC2 - voltage-dependent anion channel 2 gi\|114631347 - gi\|114631347\|ref\|XP_001139957.1\| PREDICTED: voltage-dependent anion channel 2 [Pan troglodytes]	376.0	[0..8]	[295..7]
VDAC2_RABIT - Voltage-dependent anion-selective channel protein 2 OS=Oryctolagus cuniculus GN=VDAC2 PE=2 SV=1 POR2_BOVIN - (P68002) Voltage-dependent anion-selective channel protein 2 (Outer mitochondrial membrane protein p...	376.0	[0..8]	[295..7]
gi\|73953097, gi\|... - gi\|73953097\|ref\|XP_536398.2\| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1 [Cani...	375.0	[0..9]	[295..8]
VDAC2_BOVIN - Voltage-dependent anion-selective channel protein 2 OS=Bos taurus GN=VDAC2 PE=2 SV=2	374.0	[0..9]	[295..8]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAECCVPVCP RPMCIPPPYA DLGKAARDIF NKGFGFGLVK LDVKTKSCSG VEFSTSGSSN  60
   61 TDTGKVSGTL ETKYKWCEYG LTFTEKWNTD NTLGTEIAIE DQICQGLKLT FDTTFSPNTG 120
  121 KKSGKIKSAY KRECINLGCD VDFDFAGPAI HGSAVFG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.102373
Match:	PF01459.13
Description:	No description for PF01459.13 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEGWLAGYQM TFDSAKSKLT RSNFAVGYRT GDFQLHTNVN NGTEFGGSIY QKVCEDFDTS  60
   61 VNLAWTSGTN CTRFGIAAKY QLDPTASISA KVNNSSLIGV GYTQTLRPGV KLTLSALVDG 120
  121 KSFNAGGHKL GLALELEA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	2ervA
Description:	No description for 2ervA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits