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View Structure Prediction Details

Protein: gi|94994083, gi|...
Organism: Streptococcus pyogenes MGAS10750
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94994083, gi|....

Description E-value Query
Range
Subject
Range
gi|19745866, gi|... - gi|19748016|gb|AAL97501.1| putative RNA polymerase sigma 42 protein [Streptococcus pyogenes MGAS8232...
312.0 [0..1] [369..1]

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Predicted Domain #1
Region A:
Residues: [1-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQKEITTF NVQVAEFIRH HKKEGTAIDD DVTEKLVIPF ALDADQIDDL LERLTDGGIS  60
   61 ITDKEGNPSS KYIVEEPKPE ELTDEELIGS NSAKVNDPVR MYLKEIGVVP LLTSEEEKEL 120
  121 AVAVAKGDLM AKQRLAEANL RLVVSIAKRY VGRGMQFLDL IQEGNMGLMK AVDKFDYSKG 180
  181 FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLV REQRNLLQEL GQDPTPEQIA 240
  241 ERMEMTPDKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DEVIENPVDY TTRVVLREQL 300
  301 DEVLDTLTDR EENVLRLRFG LDDGKMRTLE DVGKVFNVTR ERIRQIEAKA LRKLRHPSRS 360
  361 KQLRDFIED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.30103
Match: 1l9zH
Description: DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle