YRC Public Data Repository - Protein Structure Prediction

Protein:	RL9_MOUSE
Organism:	Mus musculus
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL9_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|60653317 - gi\|60653317\|gb\|AAX29353.1\| ribosomal protein L9 [synthetic construct]	280.0	[0..1]	[192..1]
gi\|149702815 - gi\|149702815\|ref\|XP_001498213.1\| PREDICTED: similar to ribosomal protein L9 [Equus caballus] gi\|109074023 - gi\|109074023\|ref\|XP_001092114.1\| PREDICTED: similar to ribosomal protein L9 [Macaca mulatta] tr\|M3WGN1\|M3WGN1... - Ribosomal protein L9 OS=Felis catus GN=RPL9 PE=4 SV=1 gi\|123984615, gi... - gi\|60656375\|gb\|AAX32751.1\| ribosomal protein L9 [synthetic construct], gi\|123998597\|gb\|ABM86900.1\| r... gi\|114593631 - gi\|114593631\|ref\|XP_001141738.1\| PREDICTED: similar to rat ribosomal protein L9 homologue [Pan trogl... ENSCJAT00000001319 - null gi\|73951565, gi\|... - gi\|73951565\|ref\|XP_863548.1\| PREDICTED: similar to ribosomal protein L9 isoform 2 [Canis familiaris]... RPL9 - ribosomal protein L9 gi\|90075212, gi\|... - gi\|90075474\|dbj\|BAE87417.1\| unnamed protein product [Macaca fascicularis], gi\|90075212\|dbj\|BAE87286....	279.0	[0..1]	[192..1]
RL9_MACFA - 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1	279.0	[0..1]	[192..1]
gi\|114620151 - gi\|114620151\|ref\|XP_001152896.1\| PREDICTED: similar to rat ribosomal protein L9 homologue isoform 2 ...	278.0	[0..1]	[192..1]
RL9_BOVIN - 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1	278.0	[0..1]	[192..1]
gi\|50747090, gi\|... - gi\|50774641\|ref\|XP_423225.1\| PREDICTED: similar to rat ribosomal protein L9 homologue [Gallus gallus...	277.0	[0..1]	[192..1]
RL9_PONPY - 60S ribosomal protein L9 - Pongo pygmaeus (Orangutan) RL9_PONAB - 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1	277.0	[0..1]	[192..1]
gi\|57706 - gi\|57706\|emb\|CAA36002.1\| unnamed protein product [Rattus rattus] RL9_RAT - 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1	277.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTILSNQTV DIPENVEITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK KKKRLRVDKW  60
   61 WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP INVVIQENGS LVEIRNFLGE 120
  121 KYIRRVRMRT GVACSVSQAQ KDELILEGND IELVSNSAAL IQQATTVKNK DIRKFLDGIY 180
  181 VSEKGTVQQA DE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1s1iH
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits