YRC Public Data Repository - Protein Structure Prediction

Protein:	SSRD_MOUSE
Organism:	Mus musculus
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSRD_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109132737, gi... - gi\|109132739\|ref\|XP_001087023.1\| PREDICTED: similar to Translocon-associated protein delta subunit p...	286.0	[0..19]	[172..20]
gi\|133736995, gi... - gi\|84570093\|gb\|AAI10716.1\| LOC398633 protein [Xenopus laevis], gi\|133736995\|gb\|AAI33750.1\| LOC398633...	283.0	[0..20]	[172..27]
gi\|12851198 - gi\|12851198\|dbj\|BAB28972.1\| unnamed protein product [Mus musculus]	283.0	[0..1]	[172..1]
gi\|61371546, gi\|... - gi\|61371552\|gb\|AAX43688.1\| signal sequence receptor delta [synthetic construct], gi\|61371546\|gb\|AAX4...	281.0	[0..23]	[172..24]
gi\|114690610, gi... - gi\|114690612\|ref\|XP_001139292.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114... SSRD_PONAB - Translocon-associated protein subunit delta OS=Pongo abelii GN=SSR4 PE=2 SV=2 SSR4 - signal sequence receptor, delta (translocon-associated protein delta) SSRD_PONPY - Translocon-associated protein subunit delta precursor - Pongo pygmaeus (Orangutan) gi\|208967408, gi... - gi\|60654985\|gb\|AAX32056.1\| signal sequence receptor delta [synthetic construct], gi\|60654983\|gb\|AAX3...	280.0	[0..23]	[172..24]
gi\|55726115 - gi\|55726115\|emb\|CAH89831.1\| hypothetical protein [Pongo abelii] gi\|197100743 - gi\|197100743\|ref\|NP_001127202.1\| signal sequence receptor, delta (translocon-associated protein delt...	279.0	[0..23]	[172..27]
SSRD_RAT - Translocon-associated protein subunit delta OS=Rattus norvegicus GN=Ssr4 PE=2 SV=1	279.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMASFGAL ALLLLSGLSC CSEACLEPQI TPSYYTTSDA VISTETVFIV EISLTCKNRV  60
   61 QNMALYADVS GKQFPVTRGQ DVGRYQVSWS LEHKSAHAGT YEVRFFDEES YSLLRKAQRN 120
  121 NEDVSIIPPL FTVSVDHRGT WNGPWVSTEV LAAVIGIVIY YLAFSAKSHI QA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	126.721246
Match:	PF05404.3
Description:	No description for PF05404.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits