YRC Public Data Repository - Protein Structure Prediction

Protein:	CHM1A_MOUSE
Organism:	Mus musculus
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHM1A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	198.0	[0..1]	[194..594]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	165.0	[0..1]	[194..261]
gi\|50731660 - gi\|50731660\|ref\|XP_418312.1\| PREDICTED: similar to Snf7 homologue associated with Alix 3 [Gallus gal...	163.0	[0..2]	[193..258]
gi\|114620768 - gi\|114620768\|ref\|XP_528179.2\| PREDICTED: similar to Chromatin modifying protein 4C [Pan troglodytes]	149.0	[0..2]	[193..136]
orf19.4307, orf1... - orf19.4307 CGDID:CAL0000893 Assembly 19, Contig19-10202 (157448, 158326) CDS, translated using codon... gi\|46442490, gi\|... - gi\|68470737\|ref\|XP_720614.1\| hypothetical protein CaO19.4307 [Candida albicans SC5314], gi\|68470476\|...	149.0	[0..1]	[196..95]
gi\|58258811, gi\|... - gi\|58258811\|ref\|XP_566818.1\| protein-vacuolar targeting-related protein [Cryptococcus neoformans var...	142.0	[0..1]	[195..53]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDTLFQLKF TAKQLEKLAK KAEKDSKAEQ AKVKKALQQK NVECARVYAE NAIRKKNEGV  60
   61 NWLRMASRVD AVASKVQTAV TMKGVTKNMA QVTKALDKAL SAMDLQKVSA VMDRFEQQVQ 120
  121 NLDVHTSVME DSVSSATTLT TPQEQVDSLI VQIAEENGLE VLDQLSQLPE GASAVGESSV 180
  181 RSQEDQLSRR LAALRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits