YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165914708, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165914708, gi....

Description	E-value	Query Range	Subject Range
Q666Q9\|Q666Q9_YERPS - Putative Methenyl-THF synthetase-family protein - Yersinia pseudotuberculosis gi\|153950067, gi... - gi\|77630165\|ref\|ZP_00792751.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Yersinia pseudotuberc... gi\|169749643, gi... - gi\|170023109\|ref\|YP_001719614.1\| 5-formyltetrahydrofolate cyclo-ligase [Yersinia pseudotuberculosis ... gi\|51597498, gi\|... - gi\|51597498\|ref\|YP_071689.1\| putative Methenyl-THF synthetase-family protein (MTHFS). [Yersinia pseu...	5.0E-67	[1..198]	[1..198]
gi\|238785666, gi... - gi\|77956688\|ref\|ZP_00820771.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Yersinia bercovieri A...	6.0E-64	[3..198]	[9..204]
gi\|192930785, gi... - gi\|193063508\|ref\|ZP_03044597.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli E22], gi\|... gi\|208725708, gi... - gi\|208805907\|ref\|ZP_03248244.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|189403793, gi... - gi\|189403793\|ref\|ZP_02785050.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|38704126 - gi\|38704126\|ref\|NP_311809.2\| putative ligase [Escherichia coli O157:H7] gi\|189404764, gi... - gi\|189404764\|ref\|ZP_02810768.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|209160736, gi... - gi\|209399336\|ref\|YP_002272387.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 ... gi\|217319900, gi... - gi\|217327533\|ref\|ZP_03443616.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|208735489, gi... - gi\|208814212\|ref\|ZP_03255541.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|208819943, gi... - gi\|208819943\|ref\|ZP_03260263.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|170018843, gi... - gi\|170018843\|ref\|YP_001723797.1\| putative ligase [Escherichia coli ATCC 8739], gi\|169753771\|gb\|ACA76... gi\|194424183, gi... - gi\|83587693\|ref\|ZP_00926320.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli 101-... gi\|189401951, gi... - gi\|189401951\|ref\|ZP_02778860.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|194415490, gi... - gi\|75212474\|ref\|ZP_00712498.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli B171... gi\|189402865, gi... - gi\|189402865\|ref\|ZP_02791915.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|75228579, gi\|... - gi\|75228579\|ref\|ZP_00715208.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli B7A]... gi\|188024584, gi... - gi\|188024584\|ref\|ZP_02772628.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|192959432, gi... - gi\|75239520\|ref\|ZP_00723491.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli E110... gi\|189010397, gi... - gi\|189010397\|ref\|ZP_03006309.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|38704126 - gi\|38704126\|ref\|NP_311809.2\| putative ligase [Escherichia coli O157:H7 str. Sakai] gi\|33347709\|ref\|... - putative ligase [Escherichia coli K12], putative ligase [Escherichia coli K12], 5-formyltetrahydrofo...	2.0E-62	[8..198]	[10..200]
gi\|190907936, gi... - gi\|75241292\|ref\|ZP_00725154.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli F11]... gi\|253772248, gi... - gi\|253772248\|ref\|YP_003035079.1\| 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli BL21(DE3)],... gi\|170683068, gi... - gi\|170683068\|ref\|YP_001745065.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli SMS-3-5]...	3.0E-62	[8..198]	[10..200]
gi\|71280724, gi\|... - gi\|71280724\|ref\|YP_270316.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Colwellia psychre...	9.0E-62	[11..198]	[4..191]
gi\|110643059, gi... - gi\|110643059\|ref\|YP_670789.1\| putative ligase [Escherichia coli 536], gi\|110344651\|gb\|ABG70888.1\| pu...	2.0E-61	[8..198]	[58..248]
gi\|27364918, gi\|... - gi\|27364918\|ref\|NP_760446.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus CMCP6], gi\|273... gi\|37681033, gi\|... - gi\|37681033\|ref\|NP_935642.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus YJ016], gi\|371...	2.0E-61	[6..198]	[1..195]
gi\|24053305, gi\|... - ref\|NP_708674.1\| putative ligase [Shigella flexneri 2a str. 301], gb\|AAN44381.1\| putative ligase [S... gi\|110616361, gi... - gi\|110806813\|ref\|YP_690333.1\| putative ligase [Shigella flexneri 5 str. 8401], gi\|110616361\|gb\|ABF05...	2.0E-61	[8..198]	[58..248]
gi\|37527472, gi\|... - gi\|37527472\|ref\|NP_930816.1\| hypothetical protein plu3604 [Photorhabdus luminescens subsp. laumondii...	3.0E-61	[3..198]	[1..197]
gi\|254230209, gi... - gi\|75853743\|ref\|ZP_00761514.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio sp. Ex25], gi\|...	5.0E-61	[9..198]	[4..195]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNPQHALE RQRIRAEIRE HRRLLTPVQQ QQSAHLAAQH IAEHPKIQQA HTVAVFLSFD  60
   61 GELDTQPIIE QLWQQKKQVY LPVLHPFSPG NLLFLRYRPE SPLIRNRLKI LEPQLDVREV 120
  121 LPLHQLDVVI TPLVAFDRHG QRLGMGGGFY DRTLQRWQQN GPYPIGLAHD CQLVDKLPSE 180
  181 YWDVPLPEIV TPAKVWQW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	1ydmA
Description:	X-Ray structure of Northeast Structural Genomics target SR44
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits