YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89102432
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89102432.

Description	E-value	Query Range	Subject Range
gi\|51590424, gi\|... - gi\|51597142\|ref\|YP_071333.1\| hypothetical protein YPTB2826 [Yersinia pseudotuberculosis IP 32953], g... gi\|186699261, gi... - gi\|186896235\|ref\|YP_001873347.1\| hypothetical protein YPTS_2933 [Yersinia pseudotuberculosis PB1/+],... gi\|170023556, gi... - gi\|170023556\|ref\|YP_001720061.1\| hypothetical protein YPK_1310 [Yersinia pseudotuberculosis YPIII], ... Q668B4\|Q668B4_YERPS - Putative membrane protein precursor - Yersinia pseudotuberculosis	1.0E-86	[1..214]	[93..306]
gi\|108775085, gi... - gi\|108811437\|ref\|YP_647204.1\| membrane protein [Yersinia pestis Nepal516], gi\|108775085\|gb\|ABG17604.... gi\|108808297, gi... - gi\|108808297\|ref\|YP_652213.1\| hypothetical protein YPA_2303 [Yersinia pestis Antiqua], gi\|108780210\|... gi\|145211181, gi... - gi\|145599485\|ref\|YP_001163561.1\| membrane protein [Yersinia pestis Pestoides F], gi\|145211181\|gb\|ABP...	1.0E-82	[1..214]	[20..233]
gi\|229687951, gi... - gi\|229899006\|ref\|ZP_04514150.1\| hypothetical protein YPF_3453 [Yersinia pestis biovar Orientalis str... gi\|229838439, gi... - gi\|229838439\|ref\|ZP_04458598.1\| hypothetical protein YPH_0676 [Yersinia pestis biovar Orientalis str... gi\|21958141, gi\|... - gi\|22125269\|ref\|NP_668692.1\| hypothetical protein y1370 [Yersinia pestis KIM], gi\|21958141\|gb\|AAM849...	1.0E-82	[1..214]	[27..240]
gi\|152961936, gi... - gi\|77629870\|ref\|ZP_00792456.1\| hypothetical protein YpseI_01001217 [Yersinia pseudotuberculosis IP 3...	1.0E-80	[1..214]	[80..293]
gi\|36783839, gi\|... - gi\|37524415\|ref\|NP_927759.1\| hypothetical protein plu0406 [Photorhabdus luminescens subsp. laumondii...	4.0E-74	[1..212]	[62..273]
gi\|45437366, gi\|... - gi\|45442501\|ref\|NP_994040.1\| hypothetical protein YP_2729 [Yersinia pestis biovar Microtus str. 9100...	1.0E-64	[42..214]	[1..173]
gi\|49613122, gi\|... - gi\|50122596\|ref\|YP_051763.1\| hypothetical protein ECA3675 [Pectobacterium atrosepticum SCRI1043], gi...	6.0E-55	[4..212]	[76..282]
gi\|46913351, gi\|... - gi\|54308921\|ref\|YP_129941.1\| hypothetical protein PBPRA1732 [Photobacterium profundum SS9], gi\|46913...	8.0E-54	[5..203]	[46..243]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVFSVTDP ISAYAGNIYD SRGVYDVIRE FKRFSITATE YVGENGRKYI HISGYAGLRR  60
   61 IITGTRYGAS HPQMLSMGIG QQGLSSNIVK GLKFCILFSI GYRTIEGIFK DEYTLAEFIG 120
  121 NITMDMAKIA IVAATSFIVG VLFTATVLAG GSIIVVAGVA FAVGFVATAI LDHFDEKYGI 180
  181 SEKLIALLTK EMRKKPRTQE ANFQSILNGL GRLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.675	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.576	N/A	N/A	c.44.2	Enzyme IIB-cellobiose
View	Download	0.568	N/A	N/A	c.52.2	tRNA splicing endonuclease, C-terminal domain
View	Download	0.544	N/A	N/A	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.515	N/A	N/A	b.55.1	PH domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits