YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165914189, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165914189, gi....

Description	E-value	Query Range	Subject Range
RSMA_PHOLL, KSGA... - Ribosomal RNA small subunit methyltransferase A OS=Photorhabdus luminescens subsp. laumondii GN=rsmA... RSMA_PHOLL - Ribosomal RNA small subunit methyltransferase A OS=Photorhabdus luminescens subsp. laumondii (strain...	6.0E-67	[1..271]	[1..271]
RSMA_YERP3 - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis serotype O:1b (strain... RSMA_YERPB - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis serotype IB (strain P... RSMA_YERPY - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis serotype O:3 (strain ... KSGA_YERPS, RSMA... - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis GN=rsmA PE=3 SV=1, Di... RSMA_YERPS - Ribosomal RNA small subunit methyltransferase A OS=Yersinia pseudotuberculosis serotype I (strain IP...	6.0E-65	[1..272]	[1..272]
gi\|77976653 - gi\|77976653\|ref\|ZP_00832130.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Yersinia i...	8.0E-64	[1..271]	[1..271]
gi\|77976137 - gi\|77976137\|ref\|ZP_00831670.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Yersinia f...	1.0E-63	[1..271]	[1..271]
gi\|32034722 - gi\|32034722\|ref\|ZP_00134853.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Actinobaci... RSMA_ACTP2 - Ribosomal RNA small subunit methyltransferase A OS=Actinobacillus pleuropneumoniae serotype 5b (stra...	3.0E-63	[2..270]	[5..277]
gi\|145635368, gi... - gi\|145635368\|ref\|ZP_01791070.1\| dimethyladenosine transferase [Haemophilus influenzae PittAA], gi\|14... RSMA_HAEI8 - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain 86-028NP) GN=rsmA ...	3.0E-63	[1..270]	[1..275]
gi\|77961920 - gi\|77961920\|ref\|ZP_00825748.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Yersinia m... gi\|77959757 - gi\|77959757\|ref\|ZP_00823774.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Yersinia b...	3.0E-63	[1..271]	[1..271]
gi\|229846634, gi... - gi\|229846634\|ref\|ZP_04466742.1\| dimethyladenosine transferase [Haemophilus influenzae 7P49H1], gi\|22... gi\|229845712, gi... - gi\|229845712\|ref\|ZP_04465834.1\| dimethyladenosine transferase [Haemophilus influenzae 6P18H1], gi\|22... gi\|42629998 - gi\|42629998\|ref\|ZP_00155543.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Haemophilu... RSMA_HAEIG - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain PittGG) GN=rsmA PE... RSMA_HAEIE - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain PittEE) GN=rsmA PE...	7.0E-63	[1..270]	[1..275]
RSMA_HAEIN, KSGA... - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae GN=rsmA PE=3 SV=1, Dimethy... RSMA_HAEIN - Ribosomal RNA small subunit methyltransferase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 1... gi\|145628930, gi... - gi\|145628930\|ref\|ZP_01784730.1\| dimethyladenosine transferase [Haemophilus influenzae 22.1-21], gi\|1...	7.0E-63	[1..270]	[1..275]
KSGA_VIBCH, RSMA... - Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae GN=rsmA PE=3 SV=2, Dimethyladenos... RSMA_VIBCH - Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / ... gi\|229507082, gi... - gi\|229507082\|ref\|ZP_04396588.1\| dimethyladenosine transferase [Vibrio cholerae BX 330286], gi\|229355... gi\|229354166, gi... - gi\|229508763\|ref\|ZP_04398255.1\| dimethyladenosine transferase [Vibrio cholerae B33], gi\|229354166\|gb... gi\|229512627, gi... - gi\|229512627\|ref\|ZP_04402096.1\| dimethyladenosine transferase [Vibrio cholerae TMA 21], gi\|229350304... gi\|229519750, gi... - gi\|229519750\|ref\|ZP_04409193.1\| dimethyladenosine transferase [Vibrio cholerae RC9], gi\|229344439\|gb... gi\|229519987, gi... - gi\|229519987\|ref\|ZP_04409416.1\| dimethyladenosine transferase [Vibrio cholerae TM 11079-80], gi\|2293... gi\|229338717, gi... - gi\|229525136\|ref\|ZP_04414541.1\| dimethyladenosine transferase [Vibrio cholerae bv. albensis VL426], ... gi\|229530287, gi... - gi\|229530287\|ref\|ZP_04419675.1\| dimethyladenosine transferase [Vibrio cholerae 12129(1)], gi\|2293320... gi\|229368917, gi... - gi\|229606262\|ref\|YP_002876910.1\| dimethyladenosine transferase [Vibrio cholerae MJ-1236], gi\|2293689... gi\|254850674, gi... - gi\|254850674\|ref\|ZP_05240024.1\| dimethyladenosine transferase [Vibrio cholerae MO10], gi\|254846379\|g... RSMA_VIBC3 - Ribosomal RNA small subunit methyltransferase A OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / ... gi\|121591750, gi... - gi\|121591750\|ref\|ZP_01678961.1\| dimethyladenosine transferase [Vibrio cholerae 2740-80], gi\|12154638... gi\|75814191 - gi\|75814191\|ref\|ZP_00744817.1\| COG0030: Dimethyladenosine transferase (rRNA methylation) [Vibrio cho... gi\|153217221, gi... - gi\|153217221\|ref\|ZP_01950985.1\| dimethyladenosine transferase [Vibrio cholerae 1587], gi\|124113744\|g... gi\|153224715, gi... - gi\|153224715\|ref\|ZP_01954560.1\| dimethyladenosine transferase [Vibrio cholerae MAK 757], gi\|12411750... gi\|124120912, gi... - gi\|153803545\|ref\|ZP_01958131.1\| dimethyladenosine transferase [Vibrio cholerae MZO-3], gi\|124120912\|... gi\|126509241, gi... - gi\|153820212\|ref\|ZP_01972879.1\| dimethyladenosine transferase [Vibrio cholerae NCTC 8457], gi\|126509...	1.0E-62	[1..271]	[1..270]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRVHQGHF ARKRFGQNFL NDQFVIDSIV SAIHPVPGEA VVEIGPGLGA LTEPVAARMD  60
   61 HMTVIELDRD LAARLASHPQ LKDKLTIHQQ DAMKVNFSEL SEQAGQPLRV FGNLPYNIST 120
  121 PLMFHLFSYT DAIRDMHFML QKEVVNRLVA GPNSKTYGRL TVMAQYYCNV IPVLEVPPTA 180
  181 FTPAPKVDSA VVRLIPHVQM PHPVGDVRML SRITTQAFNQ RRKTVRNSLG DLFTSEQLIE 240
  241 LGIDPILRAE NISVAQYCKL ANWLSAQSTP QK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1qyrA
Description:	2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: