YRC Public Data Repository - Protein Structure Prediction

Protein:	SYE_YERPA
Organism:	Yersinia pestis Antiqua
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYE_YERPA.

Description	E-value	Query Range	Subject Range
SYE_YERPY - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gltX PE=3 SV=1 SYE_YERP3 - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gltX PE=3 S...	0.0	[1..471]	[1..471]
gi\|77974562, gi\|... - gi\|77974562\|ref\|ZP_00830101.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia frederik...	0.0	[1..471]	[1..471]
SYE_YERPB - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gltX PE=3 SV=1 SYE_YERPS - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis GN=gltX PE=3 SV=1 SYE_YERPS - Glutamate--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=gltX PE=3 SV=1	0.0	[1..471]	[1..471]
gi\|238792027, gi... - gi\|77979154\|ref\|ZP_00834575.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia intermed...	0.0	[1..471]	[1..471]
gi\|77956833, gi\|... - gi\|77956833\|ref\|ZP_00820909.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia bercovie...	0.0	[1..471]	[1..471]
gi\|238799229, gi... - gi\|77960940\|ref\|ZP_00824792.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Yersinia mollaret...	0.0	[1..471]	[1..471]
SYE_PECAS - Glutamate--tRNA ligase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=gltX PE=3... SYE_ERWCT - Glutamate--tRNA ligase OS=Erwinia carotovora subsp. atroseptica GN=gltX PE=3 SV=1	0.0	[1..471]	[1..471]
gi\|191173782, gi... - gi\|75237962\|ref\|ZP_00721969.1\| COG0008: Glutamyl- and glutaminyl-tRNA synthetases [Escherichia coli ... SYE_ECOL5 - Glutamate--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gltX PE=3 SV=1	0.0	[1..471]	[1..471]
SYE_PHOLL - Glutamate--tRNA ligase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 /... SYE_PHOLL - Glutamyl-tRNA synthetase OS=Photorhabdus luminescens subsp. laumondii GN=gltX PE=3 SV=1	0.0	[2..470]	[3..471]
SYE_ECOL6 - Glutamate--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=gltX PE=3 S... gi\|218690541, gi... - gi\|218690541\|ref\|YP_002398753.1\| glutamyl-tRNA synthetase [Escherichia coli ED1a], gi\|218428105\|emb\|... gi\|218700867, gi... - gi\|218700867\|ref\|YP_002408496.1\| glutamyl-tRNA synthetase [Escherichia coli IAI39], gi\|218370853\|emb... gi\|227835797, gi... - gi\|227887447\|ref\|ZP_04005252.1\| glutamyl-tRNA synthetase [Escherichia coli 83972], gi\|227835797\|gb\|E... SYE_ECOL6 - Glutamate--tRNA ligase OS=Escherichia coli O6 GN=gltX PE=3 SV=1 gi\|215487659, gi... - gi\|215487659\|ref\|YP_002330090.1\| glutamyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69], ...	0.0	[1..471]	[1..471]

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Predicted Domain #1

Region A:
Residues: [1-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKTRFAPS PTGYLHVGGA RTALYSWLFS RHLGGEFVLR IEDTDLGRST QEAIDAIMDG  60
   61 MNWLNLDWDE GPYFQTKRFD RYNAVIDQML DAGTAYRCYC SKERLEALRE AQMANGEKPR 120
  121 YDGHCRDSQC THGADEPSVV RFRNPQEGSV IFDDKIRGPI EFSNQELDDL IIRRTDGSPT 180
  181 YNFCVVIDDW DMEITHVIRG EDHINNTPRQ INILKALGAP VPEYAHVSMI LGDDGKKLSK 240
  241 RHGAVGVMQY RDDGYLPEAL LNYLVRLGWS HGDQEIFSIE EMTQLFTLDA VSKSASAFNT 300
  301 EKLQWLNHHY INSLPPEQVA VHLSWHVEQL GIDTRNGPEL VEIVKLLGER CKTLKEMAES 360
  361 CRYFYEEFDA FDVDAAKKHL RPIARQPLEA VKVKLAAITE WTTENVHNAI QGTADELGVG 420
  421 MGKVGMPLRV AVTGVGQSPG MDVTVHAIGQ ARTLARIDKA LAFISEREAQ Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2cfoA
Description:	No description for 2cfoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits