YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165939397, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165939397, gi....

Description	E-value	Query Range	Subject Range
TIPL_BPN15 - Tail tip protein L OS=Enterobacteria phage N15 GN=gene 18 PE=3 SV=1	0.0	[1..249]	[1..250]
gi\|9634136, gi\|6... - gi\|9634136\|ref\|NP_037678.1\| gp18 [Enterobacteria phage HK022], gi\|6863128\|gb\|AAF30369.1\|AF069308_17 ...	0.0	[1..249]	[1..250]
gi\|9634175, gi\|6... - gi\|9634175\|ref\|NP_037712.1\| Gp18 [Enterobacteria phage HK97], gi\|6901604\|gb\|AAF31107.1\| Gp18 [Bacter...	0.0	[1..249]	[1..251]
gi\|40218247, gi\|... - gi\|46402103\|ref\|YP_006597.1\| Gp17 [Klebsiella phage phiKO2], gi\|40218247\|gb\|AAR83033.1\| Gp17 [Bacter...	0.0	[1..249]	[1..250]
SO2949 - prophage LambdaSo minor tail protein L gi\|24374475, gi\|... - gi\|24374475\|ref\|NP_718518.1\| prophage LambdaSo, minor tail protein L [Shewanella oneidensis MR-1], g...	0.0	[3..249]	[2..241]
gi\|63256721, gi\|... - gi\|66046014\|ref\|YP_235855.1\| Phage minor tail protein L [Pseudomonas syringae pv. syringae B728a], g...	0.0	[1..250]	[1..248]
gi\|120599267, gi... - gi\|82741533\|ref\|ZP_00904252.1\| Phage minor tail protein L [Shewanella sp. W3-18-1], gi\|82721097\|gb\|E...	0.0	[3..249]	[2..241]
gi\|11351086 - pir\|\|G83565 probable bacteriophage protein PA0638 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9946514, gi\|1... - gi\|9946514\|gb\|AAG04027.1\|AE004499_6 probable bacteriophage protein [Pseudomonas aeruginosa PAO1], gi...	0.0	[1..249]	[1..230]
gi\|116054367, gi... - gi\|32043831\|ref\|ZP_00141093.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|107099608 - gi\|107099608\|ref\|ZP_01363526.1\| hypothetical protein PaerPA_01000622 [Pseudomonas aeruginosa PACS2] gi\|254243715, gi... - gi\|84324135\|ref\|ZP_00972199.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa 2192], gi\|2542...	0.0	[1..249]	[1..230]
gi\|84318837, gi\|... - gi\|84318837\|ref\|ZP_00967254.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa C3719], gi\|254...	0.0	[1..249]	[1..230]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTINTDLQRL EPGNRVRLYE VDGSKFDGPL LRFHADTLPH TPEEIAAANG DESKLPAKSI  60
   61 WWQGEEYSAW PVQVEGIEMS SDGQSAQPKL SVANLDGTIT ALCLAFDDMV QAKVIVHDTF 120
  121 KHYLDAVNFP EGNSDADPEQ EKVQVYYIDS KSTET

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.823909
Match:	PF05100.3
Description:	No description for PF05100.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEIVEFTLSS PADLQGLLIP TRQIHSLCTW CMRGDYRSGN GCDYAGTLYF DEKGNPTDDP  60
   61 SKDKCSGLLV DCKKRFGADN PLPFGGFPGA ALIKR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	2d9nA
Description:	No description for 2d9nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits