YRC Public Data Repository - Protein Structure Prediction

Protein:	DADA_YERPA
Organism:	Yersinia pestis Antiqua
Length:	434 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DADA_YERPA.

Description	E-value	Query Range	Subject Range
gi\|238713180, gi... - gi\|77956652\|ref\|ZP_00820737.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia bercov...	7.0E-79	[1..434]	[1..434]
gi\|77973563, gi\|... - gi\|77973563\|ref\|ZP_00829110.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia freder...	6.0E-77	[1..434]	[1..434]
gi\|238797372, gi... - gi\|77962050\|ref\|ZP_00825876.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia mollar...	1.0E-76	[1..434]	[1..434]
gi\|117673617, gi... - gi\|77629157\|ref\|ZP_00791743.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia pseudo...	1.0E-76	[1..434]	[13..446]
gi\|77977691, gi\|... - gi\|77977691\|ref\|ZP_00833133.1\| COG0665: Glycine/D-amino acid oxidases (deaminating) [Yersinia interm...	1.0E-75	[1..434]	[28..461]
lcl\|NC_016856.1_... - [gene=dadA] [protein=D-amino acid dehydrogenase small subunit] [protein_id=YP_005237738.1] [location... DADA_SALTY - D-amino acid dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dadA P... DADA_SALEP - D-amino acid dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=dadA PE=3 SV=1 DADA_SALDC - D-amino acid dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=dadA PE=3 SV=1 gi\|197263686, gi... - gi\|197263686\|ref\|ZP_03163760.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALHS - D-amino acid dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=dadA PE=3 SV=1 gi\|167554126, gi... - gi\|205321611\|gb\|EDZ09450.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALNS - D-amino acid dehydrogenase OS=Salmonella newport (strain SL254) GN=dadA PE=3 SV=1 gi\|168462708, gi... - gi\|195634104\|gb\|EDX52456.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPB - D-amino acid dehydrogenase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dadA PE=3 SV=1 gi\|168241391, gi... - gi\|205339629\|gb\|EDZ26393.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|167993252, gi... - gi\|205328690\|gb\|EDZ15454.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPB - D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=... DADA_SALTY - D-amino acid dehydrogenase small subunit OS=Salmonella typhimurium GN=dadA PE=3 SV=1 DADA_SALTY - D-amino acid dehydrogenase small subunit OS=Salmonella typhimurium GN=dadA PE=3 SV=1	6.0E-75	[1..431]	[1..431]
DADA_SALCH - D-amino acid dehydrogenase small subunit OS=Salmonella choleraesuis GN=dadA PE=3 SV=1 DADA_SALCH - D-amino acid dehydrogenase OS=Salmonella choleraesuis (strain SC-B67) GN=dadA PE=3 SV=1 DADA_SALCH - D-amino acid dehydrogenase small subunit OS=Salmonella choleraesuis GN=dadA PE=3 SV=1	1.0E-74	[1..431]	[1..431]
gi\|213581080 - gi\|213581080\|ref\|ZP_03362906.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|213426622 - gi\|213426622\|ref\|ZP_03359372.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|213648192 - gi\|213648192\|ref\|ZP_03378245.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|213612759 - gi\|213612759\|ref\|ZP_03370585.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|16760693 - gi\|16760693\|ref\|NP_456310.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. en... DADA_SALTI - D-amino acid dehydrogenase OS=Salmonella typhi GN=dadA PE=3 SV=1 gi\|213162932 - gi\|213162932\|ref\|ZP_03348642.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... gi\|29137176, gi\|... - gi\|29141549\|ref\|NP_804891.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. en... gi\|214002620 - gi\|214002620\|ref\|ZP_03413355.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALTI - D-amino acid dehydrogenase small subunit OS=Salmonella typhi GN=dadA PE=3 SV=1	2.0E-74	[1..431]	[1..431]
gi\|168820549, gi... - gi\|205342707\|gb\|EDZ29471.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|168237865, gi... - gi\|197289224\|gb\|EDY28591.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... gi\|205332105, gi... - gi\|205332105\|gb\|EDZ18869.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp. ent... DADA_SALPA - D-amino acid dehydrogenase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=dadA PE=3 SV=1 gi\|204927940, gi... - gi\|204927940\|ref\|ZP_03219141.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp.... DADA_SALPA - D-amino acid dehydrogenase small subunit OS=Salmonella paratyphi A GN=dadA PE=3 SV=1 DADA_SALPK - D-amino acid dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=dadA PE=3 SV=1 DADA_SALA4 - D-amino acid dehydrogenase OS=Salmonella agona (strain SL483) GN=dadA PE=3 SV=1 DADA_SALSV - D-amino acid dehydrogenase OS=Salmonella schwarzengrund (strain CVM19633) GN=dadA PE=3 SV=1 gi\|194471000, gi... - gi\|194471000\|ref\|ZP_03076984.1\| D-amino acid dehydrogenase small subunit [Salmonella enterica subsp....	3.0E-74	[1..431]	[1..431]
DADA_SHIDS - D-amino acid dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=dadA PE=3 SV=1	2.0E-73	[1..431]	[1..431]

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Predicted Domain #1

Region A:
Residues: [1-434]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVVILGSGV VGVTSAWYLA KEGHDVTVID RQDGPAQETS AGNAGQISPG YAAPWAAPGV  60
   61 PLKAIKWMFQ RHAPLAIRLD GSSLQLRWMW QMLRNCDTSH YMVNKSRMVR LAEYSRDCLK 120
  121 DLRAATGIQY EGRQGGTLQL FRTEQQFDNA AKDIAVLDDA GVPYSLLTAE QLATVEPALA 180
  181 KVAHKLTGGL RLPNDETGDC KLFTERLAKM AEQAGVKFIF NRSVDKLLVE GDQIAGVLCG 240
  241 DDIIKADAYV VAFGAYSTAL LAGLVSIPVY PLKGYSLTIP ITDPASAPFS TVLDETYKIA 300
  301 ITRFDDRIRV GGMAEIVGFN TQLAPARRET LEMVVRDLYP HGGDISQAVF WSGLRPMTPD 360
  361 GTPIVGRTPL KNLYLNTGHG TLGWTMACGS GQLLADIIQG RRPAIVADDL SVARYRAGFQ 420
  421 PLNIAPLHDI HPIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2gagB
Description:	No description for 2gagB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits