YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229900452, gi...
Organism:	Yersinia pestis Nepal516
Length:	850 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229900452, gi....

Description	E-value	Query Range	Subject Range
gi\|152960628, gi... - gi\|77630746\|ref\|ZP_00793332.1\| COG3072: Adenylate cyclase [Yersinia pseudotuberculosis IP 31758], gi...	1575.0	[0..1]	[850..1]
gi\|51587823, gi\|... - gi\|51594541\|ref\|YP_068732.1\| adenylate cyclase [Yersinia pseudotuberculosis IP 32953], gi\|51587823\|e... Q66FZ9\|Q66FZ9_YERPS - Adenylate cyclase - Yersinia pseudotuberculosis	1573.0	[0..1]	[850..1]
gi\|108778085, gi... - gi\|108806172\|ref\|YP_650088.1\| adenylate cyclase [Yersinia pestis Antiqua], gi\|108778085\|gb\|ABG12143.... gi\|167048744, gi... - gi\|167401851\|ref\|ZP_02307339.1\| adenylate cyclase, class I [Yersinia pestis biovar Antiqua str. UG05...	1572.0	[0..1]	[850..1]
gi\|45437818, gi\|... - gi\|45442951\|ref\|NP_994490.1\| adenylate cyclase [Yersinia pestis biovar Microtus str. 91001], gi\|4543... gi\|229837179, gi... - gi\|229837179\|ref\|ZP_04457344.1\| adenylate cyclase [Yersinia pestis Pestoides A], gi\|229706122\|gb\|EEO...	1572.0	[0..1]	[850..1]
gi\|262931, gi\|726353 - gi\|726353\|gb\|AAC44324.1\| adenylate cyclase, gi\|262931\|gb\|AAB24799.1\| class I adenylyl cyclase=cya ge...	1565.0	[0..1]	[850..1]
gi\|238789377, gi... - gi\|77973626\|ref\|ZP_00829172.1\| COG3072: Adenylate cyclase [Yersinia frederiksenii ATCC 33641], gi\|23...	1536.0	[0..1]	[850..1]
gi\|122087544, gi... - gi\|123440583\|ref\|YP_001004577.1\| adenylate cyclase [Yersinia enterocolitica subsp. enterocolitica 80... gi\|18032024 - gi\|18032024\|gb\|AAL51150.1\| adenylate cyclase [Yersinia enterocolitica]	1534.0	[0..1]	[850..1]
CYAA_YERIN - Adenylate cyclase OS=Yersinia intermedia GN=cya PE=3 SV=1	1523.0	[0..1]	[850..1]
gi\|238727171, gi... - gi\|77978547\|ref\|ZP_00833975.1\| COG3072: Adenylate cyclase [Yersinia intermedia ATCC 29909], gi\|23879...	1523.0	[0..1]	[850..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLYIETLKQ RLDAINQLRV DRALAAMGPA FQKVYSLLPI LLHCHHPQMP GYLDGNVPHG  60
   61 VCLFTPNEIQ QDYLADVEAR WGEPLAPSAG GELPITGVYS MGSTSSIGQC HTSDLDIWVC 120
  121 HQAWLDTEER NQLQQKCSLL EKWAASM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVEVSFFLVD ENRFRHNASG SLGGEDCGST QHILLLDEFY RSAVRLAGKR ILWNMV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [204-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVKEEEHYDD YVLSLYAQGV LTPNEWLDLG GLSTLSAEEY FGASLWQLYK SIDSPYKAVL  60
   61 KTLLLEAYSW EYPNSQLLAM EIKQHLHAGE IVSFGLDAYC MMLDRVTRYL IQINDTTRLN 120
  121 LVRRCFYLKV CEKLSRTPAS TGWRREVLSQ LVSEWGWSNE KLAVLDNRAN WKIERVREAH 180
  181 NELLDAMMQS YRNLIRFARR NNLSVSASPQ DIGVLTRKLY AAFEALP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [431-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKVTLVNPQI SPDLSEEHLT FIHVPAGRAN RPGWYLYNQA PSMDAIVSHQ PLEYNRYLNK  60
   61 LVSWAYFNGL LTSKTHLHIK SANLCDTVKL QELVTDISHH FPLRLAAPTP KALYSPCEIR 120
  121 HLAIIVNLEH DPTTTFRNQV VHFDFRKLDV FSFGEQQQCL VGSIDLLYRN SWNEVRTLHF 180
  181 SGEQAVLEAL KTILGKMHQD AAPPESVDVF CYSQHLRGLI RTRIQQLVSE CIDLRLSST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [670-850]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQEPGRFKAV RVSGQTWGLF FERLSVSVQK LENAVEFYGA ISNNKLHGLS VQVETNQIHL  60
   61 PPVVDGFASE GIIQFFFEGT ADEKGFNIYI LDEANRVEVY HHCEGSKEEL VRDVSRFYSS 120
  121 SHDRFTYGSS FINFNLPQFY QIVQLDGRTQ VIPFRSNTLS QLCANIAEKE ASLPTKQCQL 180
  181 H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits