YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229679535, gi...
Organism:	Yersinia pestis Nepal516
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229679535, gi....

Description	E-value	Query Range	Subject Range
gi\|75823380, gi\|... - gi\|75823380\|ref\|ZP_00752886.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Vibrio cholerae RC3... tr\|D7HDF9\|D7HDF9... - Non-canonical purine NTP pyrophosphatase OS=Vibrio cholerae RC385 GN=VCRC385_00307 PE=3 SV=1	2.0E-81	[1..196]	[1..196]
gi\|75815260, gi\|... - gi\|75815260\|ref\|ZP_00745778.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Vibrio cholerae V52... gi\|148876091, gi... - gi\|153828382\|ref\|ZP_01981049.1\| HAM1 family protein [Vibrio cholerae 623-39], gi\|148876091\|gb\|EDL742...	5.0E-81	[1..196]	[1..196]
NTPA_VIBCH - Non-canonical purine NTP pyrophosphatase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor ... HAM1_VIBCH, NTPA... - Non-canonical purine NTP pyrophosphatase OS=Vibrio cholerae GN=VC_0456 PE=3 SV=1, HAM1 protein homol... gi\|197751436, gi... - gi\|254291167\|ref\|ZP_04961963.1\| HAM1 family protein [Vibrio cholerae AM-19226], gi\|197751436\|ref\|YP_... gi\|126519303, gi... - gi\|229509070\|ref\|ZP_04398558.1\| nucleoside 5-triphosphatase RdgB (dHAPTP dITP XTP-specific) [Vibrio ... gi\|229344427, gi... - gi\|229519738\|ref\|ZP_04409181.1\| nucleoside 5-triphosphatase RdgB (dHAPTP dITP XTP-specific) [Vibrio ... gi\|229368905, gi... - gi\|229606250\|ref\|YP_002876898.1\| nucleoside 5-triphosphatase RdgB (dHAPTP dITP XTP-specific) [Vibrio... gi\|116189570, gi... - gi\|75829103\|ref\|ZP_00758420.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Vibrio cholerae MO1...	9.0E-81	[1..196]	[1..196]
gi\|227116859, gi... - gi\|75825857\|ref\|ZP_00755292.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Vibrio cholerae O39... gi\|153216270, gi... - gi\|153216270\|ref\|ZP_01950363.1\| HAM1 family protein [Vibrio cholerae 1587], gi\|124114359\|gb\|EAY33179...	1.0E-80	[1..196]	[1..196]
gi\|116219733, gi... - gi\|75819188\|ref\|ZP_00749281.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Vibrio cholerae V51...	1.0E-79	[1..196]	[1..196]
gi\|167054308, gi... - gi\|167426705\|ref\|ZP_02318458.1\| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biova... gi\|21960274, gi\|... - gi\|22127207\|ref\|NP_670630.1\| deoxyribonucleotide triphosphate pyrophosphatase [Yersinia pestis KIM],... gi\|45438103, gi\|... - gi\|45443235\|ref\|NP_994774.1\| putative deoxyribonucleotide triphosphate pyrophosphatase [Yersinia pes... gi\|166212659, gi... - gi\|166212659\|ref\|ZP_02238694.1\| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biova... gi\|167421956, gi... - gi\|167421956\|ref\|ZP_02313709.1\| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biova... gi\|165914783, gi... - gi\|165937309\|ref\|ZP_02225873.1\| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biova... gi\|165990844, gi... - gi\|166010358\|ref\|ZP_02231256.1\| non-canonical purine NTP pyrophosphatase RdgB [Yersinia pestis biova...	2.0E-79	[1..197]	[27..223]
gi\|238798801, gi... - gi\|77961503\|ref\|ZP_00825339.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Yersinia mollaretii...	2.0E-79	[1..197]	[1..197]
gi\|238786242, gi... - gi\|77956391\|ref\|ZP_00820494.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Yersinia bercovieri...	3.0E-79	[1..197]	[1..197]
gi\|238787375, gi... - gi\|77974456\|ref\|ZP_00829996.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Yersinia frederikse...	6.0E-79	[1..197]	[14..210]
gi\|191171826, gi... - gi\|75241250\|ref\|ZP_00725112.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Escherichia coli F1... gi\|110643103, gi... - gi\|110643103\|ref\|YP_670833.1\| putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia... gi\|83587648, gi\|... - gi\|83587648\|ref\|ZP_00926275.1\| COG0127: Xanthosine triphosphate pyrophosphatase [Escherichia coli 10... gi\|91073910, gi\|... - gi\|91212336\|ref\|YP_542322.1\| putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia ... gi\|115514305, gi... - gi\|117625181\|ref\|YP_854169.1\| putative deoxyribonucleotide triphosphate pyrophosphatase [Escherichia... gi\|218366714, gi... - gi\|218559945\|ref\|YP_002392858.1\| putative deoxyribonucleotide triphosphate pyrophosphatase [Escheric... gi\|218428642, gi... - gi\|218691078\|ref\|YP_002399290.1\| putative deoxyribonucleotide triphosphate pyrophosphatase [Escheric... RDGB_ECOL6, HAM1... - dITP/XTP pyrophosphatase OS=Escherichia coli O6 GN=rdgB PE=3 SV=1, HAM1 protein homolog - Escherichi... gi\|227834778, gi... - gi\|227888509\|ref\|ZP_04006314.1\| nucleoside-triphosphatase [Escherichia coli 83972], gi\|227834778\|gb\|... RDGB_ECOL6 - dITP/XTP pyrophosphatase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rdgB PE=3... gi\|226899433, gi... - gi\|237706393\|ref\|ZP_04536874.1\| nucleoside-triphosphatase rdgB [Escherichia sp. 3_2_53FAA], gi\|22689...	8.0E-79	[1..196]	[1..196]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKIVLATGN PGKVRELANL LADFGLDVVA QTELGVESAE ETGLTFIENA ILKARHAAQT  60
   61 TGLPAIADDS GLAVDALGGA PGIYSARYAG TDASDQENLE KLLVALQNVP DEKRGAQFHC 120
  121 VLVYMRHAED PTPLVFHGQW PGVIAHQPAG AAGFGYDPIF YVPALGKTAA ELTREEKHAV 180
  181 SHRGQALKLM LDALRDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.522879
Match:	1k7kA
Description:	Hypothetical protein YggV
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleoside-triphosphate diphosphatase activity	2.25815647560441	bayes_pls_golite062009
binding	1.2828743465361	bayes_pls_golite062009
protein binding	0.121994365068808	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: