YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108807022, gi...
Organism:	Yersinia pestis Antiqua
Length:	503 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108807022, gi....

Description	E-value	Query Range	Subject Range
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	6.0E-83	[5..499]	[29..532]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	1.0E-81	[6..497]	[1090..1562]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	3.0E-79	[4..495]	[65..563]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	8.0E-79	[4..497]	[132..636]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	1.0E-78	[13..497]	[138..633]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	5.0E-78	[17..494]	[145..631]
gi\|90301547, gi\|... - gi\|90301547\|gb\|EAS31178.1\| hypothetical protein CIMG_06657 [Coccidioides immitis RS], gi\|119183443\|r...	9.0E-78	[8..500]	[63..571]
gi\|114193057, gi... - gi\|115395202\|ref\|XP_001213488.1\| general amino-acid permease GAP1 [Aspergillus terreus NIH2624], gi\|...	4.0E-77	[4..495]	[63..561]

Back

Predicted Domain #1

Region A:
Residues: [1-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQNTKIPA QQGAQRLRRE LKSRHLAMIA IGGSIGTGLF VASGATVSQA GPGGALLSYA  60
   61 LIGLMVYFLM TSLGELAAFM PVSGSFSTYG SKYVEEGFGF ALGWNYWYNW AVTIAVDLVA 120
  121 AQLVMNYWFP DAPGWIWSAL FLGLMFLLNY ISVKGFGEAE YWFSLIKVTT VVIFIIVGVM 180
  181 MITGIMKGGE TAGWHNWTIG DAPFAGGFSA MIGVAMIVGF SFQGTELIGI AAGESKDPGK 240
  241 NIPKAIRKVF WRILLFYIFA ILIISLIIPY TDPSLLRNDV KDISVSPFTL VFQNAGLLSA 300
  301 AAVMNAVILT AVLSAGNSGM YASTRMLFTL ASEGKAPRIF AKLSKGGVPR NALYATTVVA 360
  361 GLCFLSSMFG NQTVYLWLLN TSGMTGFIAW LGIAISHYRF RRGYMMQGRD LNDLPYQSGF 420
  421 FPLGPIFAFV LCLIITLGQN YQAFLQDRID WYGVTATYIG IPLFLVIWFG YKLSRGTRVV 480
  481 KYQEMEFPKW RDESEEHQKP TSR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.62
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits