YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165916080, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165916080, gi....

Description	E-value	Query Range	Subject Range
gi\|209743876, gi... - pir\|\|BVECBA bolA protein - Escherichia coli (strain K-12), gi\|41070\|emb\|CAA35633.1\| unnamed protein... gi\|81244334, gi\|... - gi\|82542923\|ref\|YP_406870.1\| possible regulator of murein genes [Shigella boydii Sb227], gi\|81244334... gi\|24050609, gi\|... - gi\|24111818\|ref\|NP_706328.1\| possible regulator of murein genes [Shigella flexneri 2a str. 301], gi\|... gi\|26246443, gi\|... - gi\|26246443\|ref\|NP_752482.1\| BolA protein [Escherichia coli CFT073], gi\|26106841\|gb\|AAN79026.1\|AE016... gi\|73854487, gi\|... - gi\|74311010\|ref\|YP_309429.1\| possible regulator of murein genes [Shigella sonnei Ss046], gi\|73854487... gi\|30061937, gi\|... - gi\|30061937\|ref\|NP_836108.1\| possible regulator of murein genes [Shigella flexneri 2a str. 2457T], g... gi\|82775659, gi\|... - gi\|82775659\|ref\|YP_402006.1\| possible regulator of murein genes [Shigella dysenteriae Sd197], gi\|812... gi\|49176023, gi\|... - gi\|49176023\|ref\|NP_414969.3\| possible regulator of murein genes [Escherichia coli K12], gb\|AAC73538.... gi\|15800165, gi\|... - gi\|15800165\|ref\|NP_286177.1\| possible regulator of murein genes [Escherichia coli O157:H7 EDL933], g... gi\|226898781, gi... - gi\|237707571\|ref\|ZP_04538052.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7 str. Sakai] gi\|91071080, gi\|... - gi\|91209506\|ref\|YP_539492.1\| BolA transcriptional regulator [Escherichia coli UTI89], gi\|91071080\|gb... gi\|115511819, gi... - gi\|117622695\|ref\|YP_851608.1\| regulator of penicillin binding proteins and beta lactamase transcript... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7]	9.0E-37	[2..106]	[12..116]
EG10125 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ... gi\|83570296, gi\|... - gi\|83570296\|ref\|ZP_00921741.1\| COG0271: Stress-induced morphogen (activity unknown) [Shigella dysent... gi\|187733173, gi... - gi\|75176909\|ref\|ZP_00697025.1\| COG0271: Stress-induced morphogen (activity unknown) [Shigella boydii... gi\|157155498, gi... - gi\|75189504\|ref\|ZP_00702771.1\| COG0271: Stress-induced morphogen (activity unknown) [Escherichia col... gi\|89107305, gi\|... - gi\|89107305\|ref\|AP_001085.1\| regulator of penicillin binding proteins and beta lactamase transcripti... BOLA_ECOLI - Protein bolA - Escherichia coli gi\|38703868 - gi\|38703868\|ref\|NP_308516.2\| putative regulator of murein genes [Escherichia coli O157:H7] BOLA_SHIFL - DNA-binding transcriptional regulator BolA OS=Shigella flexneri GN=bolA PE=3 SV=1 gi\|208814999, gi... - gi\|208814999\|ref\|ZP_03256178.1\| protein BolA [Escherichia coli O157:H7 str. EC4045], gi\|208731647\|gb... EG10125 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ... gi\|208728070, gi... - gi\|208808269\|ref\|ZP_03250606.1\| protein BolA [Escherichia coli O157:H7 str. EC4206], gi\|208728070\|gb... gi\|209157322, gi... - gi\|209395922\|ref\|YP_002269082.1\| protein BolA [Escherichia coli O157:H7 str. EC4115], gi\|209157322\|g... gi\|208822990, gi... - gi\|208822990\|ref\|ZP_03263308.1\| protein BolA [Escherichia coli O157:H7 str. EC4042], gi\|208737183\|gb... gi\|217321071, gi... - gi\|217324850\|ref\|ZP_03440934.1\| protein BolA [Escherichia coli O157:H7 str. TW14588], gi\|217321071\|g... gi\|215485516, gi... - gi\|215485516\|ref\|YP_002327947.1\| transcriptional regulator BolA [Escherichia coli O127:H6 str. E2348... gi\|38703868 - gi\|38703868\|ref\|NP_308516.2\| transcriptional regulator BolA [Escherichia coli O157:H7 str. Sakai] gi\|218364113, gi... - gi\|218557344\|ref\|YP_002390257.1\| transcriptional regulator BolA [Escherichia coli S88], gi\|218364113... gi\|110342287, gi... - gi\|110640695\|ref\|YP_668423.1\| transcriptional regulator BolA [Escherichia coli 536], gi\|110342287\|gb... gi\|218359769, gi... - gi\|218553001\|ref\|YP_002385914.1\| transcriptional regulator BolA [Escherichia coli IAI1], gi\|21835976... gi\|170080021, gi... - gi\|170080021\|ref\|YP_001729341.1\| regulator of penicillin binding proteins and beta lactamase transcr... gi\|170021193, gi... - gi\|170021193\|ref\|YP_001726147.1\| transcriptional regulator BolA [Escherichia coli ATCC 8739], gi\|169... gi\|188495085, gi... - gi\|188495085\|ref\|ZP_03002355.1\| protein BolA [Escherichia coli 53638], gi\|188490284\|gb\|EDU65387.1\| p... gi\|170519298, gi... - gi\|170681580\|ref\|YP_001742578.1\| protein BolA [Escherichia coli SMS-3-5], gi\|170519298\|gb\|ACB17476.1... gi\|194430600, gi... - gi\|194430600\|ref\|ZP_03063058.1\| protein BolA [Escherichia coli B171], gi\|194411357\|gb\|EDX27721.1\| pr... gi\|227838641, gi... - gi\|227884555\|ref\|ZP_04002360.1\| protein BolA [Escherichia coli 83972], gi\|227838641\|gb\|EEJ49107.1\| p... gi\|191174688, gi... - gi\|191174688\|ref\|ZP_03036153.1\| protein BolA [Escherichia coli F11], gi\|190905031\|gb\|EDV64705.1\| pro... gi\|238899723, gi... - gi\|238899723\|ref\|YP_002925519.1\| regulator of penicillin binding proteins and beta lactamase transcr... gi\|195938499 - gi\|195938499\|ref\|ZP_03083881.1\| transcriptional regulator BolA [Escherichia coli O157:H7 str. EC4024... gi\|251783943, gi... - gi\|251783943\|ref\|YP_002998247.1\| hypothetical protein B21_00390 [Escherichia coli BL21], gi\|24237621... gi\|194420851, gi... - gi\|194440212\|ref\|ZP_03072248.1\| protein BolA [Escherichia coli 101-1], gi\|194420851\|gb\|EDX36902.1\| p... gi\|254160504, gi... - gi\|254160504\|ref\|YP_003043612.1\| regulator of penicillin binding proteins and beta lactamase transcr... gi\|253976615, gi... - gi\|254287308\|ref\|YP_003053056.1\| regulator of penicillin binding proteins and beta lactamase transcr... gi\|254591019, gi... - gi\|254791619\|ref\|YP_003076456.1\| regulator of penicillin binding proteins and beta lactamase transcr... BOLA_ECOL6 - Protein BolA OS=Escherichia coli O6 GN=bolA PE=3 SV=1 gi\|218350630, gi... - gi\|218693898\|ref\|YP_002401565.1\| transcriptional regulator BolA [Escherichia coli 55989], gi\|2183506... gi\|218688298, gi... - gi\|218688298\|ref\|YP_002396510.1\| transcriptional regulator BolA [Escherichia coli ED1a], gi\|21842586... gi\|218430815, gi... - gi\|218703718\|ref\|YP_002411237.1\| transcriptional regulator BolA [Escherichia coli UMN026], gi\|218430... gi\|218368639, gi... - gi\|218698653\|ref\|YP_002406282.1\| transcriptional regulator BolA [Escherichia coli IAI39], gi\|2183686... gi\|161986570 - gi\|161986570\|ref\|YP_309429.2\| transcriptional regulator BolA [Shigella sonnei Ss046] gi\|161984977 - gi\|161984977\|ref\|YP_406870.2\| transcriptional regulator BolA [Shigella boydii Sb227] gi\|162317585 - gi\|162317585\|ref\|YP_851608.2\| transcriptional regulator BolA [Escherichia coli APEC O1] gi\|162138477 - gi\|162138477\|ref\|YP_539492.2\| transcriptional regulator BolA [Escherichia coli UTI89] gi\|189362485, gi... - gi\|189362485\|gb\|EDU80904.1\| protein BolA [Escherichia coli O157:H7 str. EC4486], gi\|168768388\|ref\|ZP... gi\|168754538, gi... - gi\|189358003\|gb\|EDU76422.1\| protein BolA [Escherichia coli O157:H7 str. EC4401], gi\|168754538\|ref\|ZP... gi\|189373467, gi... - gi\|189373467\|gb\|EDU91883.1\| protein BolA [Escherichia coli O157:H7 str. EC869], gi\|168786284\|ref\|ZP_... gi\|188999407, gi... - gi\|188999407\|gb\|EDU68393.1\| protein BolA [Escherichia coli O157:H7 str. EC4076], gi\|168783303\|ref\|ZP... gi\|161367637 - gi\|161367637\|ref\|NP_286177.2\| transcriptional regulator BolA [Escherichia coli O157:H7 EDL933] gi\|157159961, gi... - gi\|157159961\|ref\|YP_001457279.1\| transcriptional regulator BolA [Escherichia coli HS], gi\|157065641\|... BOLA_ECOL6 - DNA-binding transcriptional regulator BolA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... gi\|161485941 - gi\|161485941\|ref\|NP_706328.2\| transcriptional regulator BolA [Shigella flexneri 2a str. 301] gi\|161950162 - gi\|161950162\|ref\|YP_402006.2\| transcriptional regulator BolA [Shigella dysenteriae Sd197] gi\|161486534 - gi\|161486534\|ref\|NP_836108.2\| transcriptional regulator BolA [Shigella flexneri 2a str. 2457T]	3.0E-36	[2..106]	[1..105]
gi\|56414398, gi\|... - gi\|56414398\|ref\|YP_151473.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser... gi\|161504377, gi... - gi\|161504377\|ref\|YP_001571489.1\| transcriptional regulator BolA [Salmonella enterica subsp. arizonae... gi\|238911422 - gi\|238911422\|ref\|ZP_04655259.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|16501717, gi\|... - gi\|25300378\|pir\|\|AI0557 BolA protein [imported] - Salmonella enterica subsp. enterica serovar Typhi ... gi\|16418953, gi\|... - gi\|16763827\|ref\|NP_459442.1\| transcriptional regulator BolA [Salmonella typhimurium LT2], gi\|1641895... gi\|197212471, gi... - gi\|197248768\|ref\|YP_002145427.1\| protein BolA [Salmonella enterica subsp. enterica serovar Agona str... gi\|197244177, gi... - gi\|197265922\|ref\|ZP_03165996.1\| protein BolA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197363318, gi... - gi\|197363318\|ref\|YP_002142955.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|197937434, gi... - gi\|198242918\|ref\|YP_002214400.1\| protein BolA [Salmonella enterica subsp. enterica serovar Dublin st... gi\|194401515, gi... - gi\|194442852\|ref\|YP_002039689.1\| protein BolA [Salmonella enterica subsp. enterica serovar Newport s... gi\|194447317, gi... - gi\|194447317\|ref\|YP_002044481.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|194457196, gi... - gi\|194470832\|ref\|ZP_03076816.1\| protein BolA [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|194734965, gi... - gi\|194734965\|ref\|YP_002113477.1\| protein BolA [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|168240271, gi... - gi\|205340222\|gb\|EDZ26986.1\| protein BolA [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|205349843, gi... - gi\|205349843\|gb\|EDZ36474.1\| protein BolA [Salmonella enterica subsp. enterica serovar Hadar str. RI_... lcl\|NC_016856.1_... - [gene=bolA] [protein=transcriptional regulator BolA] [protein_id=YP_005236141.1] [location=501694..5... gi\|195631964, gi... - gi\|195631964\|gb\|EDX50484.1\| protein BolA [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205343965, gi... - gi\|205343965\|gb\|EDZ30729.1\| protein BolA [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|161364726, gi... - gi\|161615362\|ref\|YP_001589327.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|167551740, gi... - gi\|205323408\|gb\|EDZ11247.1\| protein BolA [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205334069, gi... - gi\|205334069\|gb\|EDZ20833.1\| protein BolA [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|168237559, gi... - gi\|197289573\|gb\|EDY28936.1\| protein BolA [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|214001926 - gi\|214001926\|ref\|ZP_03412661.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213616066 - gi\|213616066\|ref\|ZP_03371892.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213646007 - gi\|213646007\|ref\|ZP_03376060.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213853066 - gi\|213853066\|ref\|ZP_03382598.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213974200 - gi\|213974200\|ref\|ZP_03401459.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213161816 - gi\|213161816\|ref\|ZP_03347526.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213419492 - gi\|213419492\|ref\|ZP_03352558.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213425860 - gi\|213425860\|ref\|ZP_03358610.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213580886 - gi\|213580886\|ref\|ZP_03362712.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|200390073, gi... - gi\|200390073\|ref\|ZP_03216684.1\| protein BolA [Salmonella enterica subsp. enterica serovar Virchow st... gi\|205271538, gi... - gi\|205351757\|ref\|YP_002225558.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|206707729, gi... - gi\|207855926\|ref\|YP_002242577.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|213023413 - gi\|213023413\|ref\|ZP_03337860.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|29142802, gi\|... - gi\|29142802\|ref\|NP_806144.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser... gi\|16759426 - gi\|16759426\|ref\|NP_455043.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser...	2.0E-35	[2..106]	[1..105]
gi\|37199524, gi\|... - gi\|37680775\|ref\|NP_935384.1\| cell division protein BolA [Vibrio vulnificus YJ016], gi\|37199524\|dbj\|B...	1.0E-34	[3..104]	[24..125]
gi\|238729045, gi... - gi\|77979393\|ref\|ZP_00834812.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia interm...	3.0E-34	[1..106]	[2..107]
gi\|76794909, gi\|... - gi\|76794909\|ref\|ZP_00777362.1\| BolA-like protein [Pseudoalteromonas atlantica T6c], gi\|76589816\|gb\|E...	5.0E-34	[2..103]	[1..102]
gi\|238715489, gi... - gi\|77956939\|ref\|ZP_00821011.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia bercov...	6.0E-34	[1..106]	[2..107]
gi\|254849424, gi... - gi\|75830031\|ref\|ZP_00759317.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... BOLA_VIBCH - DNA-binding transcriptional regulator BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... gi\|146316430, gi... - gi\|75827583\|ref\|ZP_00757018.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|121726775, gi... - gi\|75815769\|ref\|ZP_00746262.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|227010308, gi... - gi\|227082420\|ref\|YP_002810971.1\| bolA protein [Vibrio cholerae M66-2], gi\|227010308\|gb\|ACP06520.1\| b... gi\|121549568, gi... - gi\|121586156\|ref\|ZP_01675947.1\| bolA protein [Vibrio cholerae 2740-80], gi\|121549568\|gb\|EAX59592.1\| ... gi\|124119746, gi... - gi\|153221399\|ref\|ZP_01952377.1\| bolA protein [Vibrio cholerae MAK 757], gi\|124119746\|gb\|EAY38489.1\| ... BOLA_VIBCH - Protein BolA OS=Vibrio cholerae GN=bolA PE=3 SV=1 gi\|153817860, gi... - gi\|153817860\|ref\|ZP_01970527.1\| bolA protein [Vibrio cholerae NCTC 8457], gi\|126511568\|gb\|EAZ74162.1... gi\|126520974, gi... - gi\|153821481\|ref\|ZP_01974148.1\| bolA protein [Vibrio cholerae B33], gi\|126520974\|gb\|EAZ78197.1\| bolA...	1.0E-33	[3..103]	[1..101]
gi\|84779167, gi\|... - gi\|85058647\|ref\|YP_454349.1\| transcriptional regulator BolA [Sodalis glossinidius str. 'morsitans'],...	1.0E-33	[2..106]	[1..105]
gi\|27361318, gi\|... - gi\|27365171\|ref\|NP_760699.1\| BolA-like protein [Vibrio vulnificus CMCP6], gi\|27361318\|gb\|AAO10226.1\|...	2.0E-33	[3..104]	[1..102]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILIREQIEE KLKAAFVPDH LEVINESYRH NVPAGSESHF KIVIVSDKFQ DQRFLSRHRS  60
   61 IYSVLADELA GSVHALALHT YTRKEWAGLQ DTVPASPSCR GANTLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2dhmA
Description:	No description for 2dhmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits