YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108774722, gi...
Organism:	Yersinia pestis Nepal516
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108774722, gi....

Description	E-value	Query Range	Subject Range
gi\|229681230, gi... - gi\|229901301\|ref\|ZP_04516423.1\| Phosphatidylglycerophosphatase A [Yersinia pestis Nepal516], gi\|2296... gi\|22124911, gi\|... - gi\|22124911\|ref\|NP_668334.1\| phosphatidylglycerophosphatase [Yersinia pestis KIM], gi\|21957748\|gb\|AA...	4.0E-53	[1..161]	[10..170]
gi\|56128682, gi\|... - gi\|56414425\|ref\|YP_151500.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|238911447 - gi\|238911447\|ref\|ZP_04655284.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|205351731, gi... - gi\|205351731\|ref\|YP_002225532.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|197094822, gi... - gi\|197363345\|ref\|YP_002142982.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|16501688, gi\|... - gi\|25323020\|pir\|\|AD0554 phosphatidylglycerophosphatase A [imported] - Salmonella enterica subsp. ent... gi\|16418925, gi\|... - gi\|16763800\|ref\|NP_459415.1\| phosphatidylglycerophosphatase A [Salmonella typhimurium LT2], gi\|16418... gi\|29142831, gi\|... - gi\|29142831\|ref\|NP_806173.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|16759397 - gi\|16759397\|ref\|NP_455014.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s... gi\|213615895 - gi\|213615895\|ref\|ZP_03371721.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213427854 - gi\|213427854\|ref\|ZP_03360604.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213025238 - gi\|213025238\|ref\|ZP_03339685.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=pgpA] [protein=phosphatidylglycerophosphatase A] [protein_id=YP_005236112.1] [location=473673.... gi\|206707704, gi... - gi\|207855901\|ref\|YP_002242552.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|224582258, gi... - gi\|224582258\|ref\|YP_002636056.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteri... gi\|214000377 - gi\|214000377\|ref\|ZP_03411112.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213855377 - gi\|213855377\|ref\|ZP_03383617.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric... gi\|213650171 - gi\|213650171\|ref\|ZP_03380224.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enteric...	9.0E-51	[2..161]	[9..168]
gi\|54307998, gi\|... - gi\|54307998\|ref\|YP_129018.1\| phosphatidylglycerophosphatase A [Photobacterium profundum SS9], gi\|469...	3.0E-50	[1..159]	[1..159]
gi\|218557327, gi... - gi\|218557327\|ref\|YP_002390240.1\| phosphatidylglycerophosphatase A [Escherichia coli S88], gi\|2183640... gi\|215263571, gi... - gi\|215485499\|ref\|YP_002327930.1\| phosphatidylglycerophosphatase A [Escherichia coli O127:H6 str. E23... gi\|115511803, gi... - gi\|117622679\|ref\|YP_851592.1\| phosphatidylglycerophosphatase A [Escherichia coli APEC O1], gi\|115511... gi\|227838660, gi... - gi\|227884574\|ref\|ZP_04002379.1\| phosphatidylglycerophosphatase A [Escherichia coli 83972], gi\|227838... gi\|26106822, gi\|... - gi\|26246424\|ref\|NP_752463.1\| phosphatidylglycerophosphatase A [Escherichia coli CFT073], gi\|26106822... gi\|75238745 - gi\|75238745\|ref\|ZP_00722733.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|91209487, gi\|... - gi\|91209487\|ref\|YP_539473.1\| phosphatidylglycerophosphatase A [Escherichia coli UTI89], gi\|91071061\|... gi\|237707588, gi... - gi\|237707588\|ref\|ZP_04538069.1\| phosphatidylglycerophosphatase A [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110342271, gi... - gi\|110640679\|ref\|YP_668407.1\| phosphatidylglycerophosphatase A [Escherichia coli 536], gi\|110342271\|...	4.0E-50	[2..161]	[9..168]
gi\|110613988, gi... - gi\|110804440\|ref\|YP_687960.1\| phosphatidylglycerophosphatase A [Shigella flexneri 5 str. 8401], gi\|1...	4.0E-50	[2..161]	[6..165]
gi\|62126664, gi\|... - gi\|62179031\|ref\|YP_215448.1\| phosphatidylglycerophosphatase A [Salmonella enterica subsp. enterica s...	6.0E-50	[2..161]	[9..168]
gi\|81239825, gi\|... - gi\|82775677\|ref\|YP_402024.1\| phosphatidylglycerophosphatase A [Shigella dysenteriae Sd197], gi\|81239...	6.0E-50	[2..161]	[9..168]
EG10704 - phosphatidylglycerophosphatase A / Phosphatidylglycerophosphatase A, membrane bound gi\|238862032, gi... - gi\|238899706\|ref\|YP_002925502.1\| phosphatidylglycerophosphatase A [Escherichia coli BW2952], gi\|2388... gi\|242376196, gi... - gi\|251783923\|ref\|YP_002998227.1\| hypothetical protein B21_00370 [Escherichia coli BL21], gi\|24237619... gi\|254287288, gi... - gi\|254287288\|ref\|YP_003053036.1\| phosphatidylglycerophosphatase A [Escherichia coli BL21(DE3)], gi\|2... gi\|253972385, gi... - gi\|254160484\|ref\|YP_003043592.1\| phosphatidylglycerophosphatase A [Escherichia coli B str. REL606], ... PGPA_ECOLI - Phosphatidylglycerophosphatase A (EC 3.1.3.27) - Escherichia coli gi\|85674558, gi\|... - gi\|89107288\|ref\|AP_001068.1\| phosphatidylglycerophosphatase A [Escherichia coli str. K-12 substr. W3... gi\|74310987, gi\|... - gi\|74310987\|ref\|YP_309406.1\| phosphatidylglycerophosphatase A [Shigella sonnei Ss046], gi\|73854464\|g... gi\|188488732, gi... - gi\|75512479\|ref\|ZP_00735018.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75256790 - gi\|75256790\|ref\|ZP_00728395.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|157081317, gi... - gi\|75189485\|ref\|ZP_00702752.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75176892, gi\|... - gi\|75176892\|ref\|ZP_00697008.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Shige... gi\|83723250, gi\|... - gi\|83750083\|ref\|ZP_00946958.1\| Phosphatidylglycerophosphatase A [Ralstonia solanacearum UW551], gi\|8... gi\|83585663 - gi\|83585663\|ref\|ZP_00924305.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75237200 - gi\|75237200\|ref\|ZP_00721247.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75230143 - gi\|75230143\|ref\|ZP_00716647.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|75209974 - gi\|75209974\|ref\|ZP_00710163.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|157159939, gi... - gi\|75194637\|ref\|ZP_00704707.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Esche... gi\|169887839, gi... - gi\|170080004\|ref\|YP_001729324.1\| phosphatidylglycerophosphatase A [Escherichia coli str. K-12 substr... gi\|170021210, gi... - gi\|170021210\|ref\|YP_001726164.1\| phosphatidylglycerophosphatase A [Escherichia coli ATCC 8739], gi\|1... gi\|218357463, gi... - gi\|218549922\|ref\|YP_002383713.1\| phosphatidylglycerophosphatase A [Escherichia fergusonii ATCC 35469... gi\|209917631, gi... - gi\|209917631\|ref\|YP_002291715.1\| phosphatidylglycerophosphatase A [Escherichia coli SE11], gi\|209910... gi\|83570314 - gi\|83570314\|ref\|ZP_00921759.1\| COG1267: Phosphatidylglycerophosphatase A and related proteins [Shige... gi\|218350610, gi... - gi\|218693878\|ref\|YP_002401545.1\| phosphatidylglycerophosphatase A [Escherichia coli 55989], gi\|21835... gi\|218552981, gi... - gi\|218552981\|ref\|YP_002385894.1\| phosphatidylglycerophosphatase A [Escherichia coli IAI1], gi\|218359... gi\|124500208, gi... - gi\|124528871\|ref\|ZP_01700056.1\| Phosphatidylglycerophosphatase [Escherichia coli B], gi\|124500208\|gb... gi\|218368659, gi... - gi\|218698673\|ref\|YP_002406302.1\| phosphatidylglycerophosphatase A [Escherichia coli IAI39], gi\|21836... EG10704 - phosphatidylglycerophosphatase A / Phosphatidylglycerophosphatase A, membrane bound	7.0E-50	[2..161]	[9..168]
gi\|25323011, gi\|... - pir\|\|C85538 phosphatidylglycerophosphatase [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|12513273, gi\|... - gi\|15800147\|ref\|NP_286159.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 EDL933], gi\|... gi\|13359928, gi\|... - gi\|15829725\|ref\|NP_308498.1\| phosphatidylglycerophosphatase [Escherichia coli O157:H7], gi\|13359928\|... gi\|195938517 - gi\|195938517\|ref\|ZP_03083899.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. EC40... gi\|13359928, gi\|... - gi\|15829725\|ref\|NP_308498.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. Sakai],... gi\|254791601, gi... - gi\|254791601\|ref\|YP_003076438.1\| phosphatidylglycerophosphatase A [Escherichia coli O157:H7 str. TW1... gi\|218703700, gi... - gi\|218703700\|ref\|YP_002411219.1\| phosphatidylglycerophosphatase A [Escherichia coli UMN026], gi\|2184...	1.0E-49	[2..161]	[9..168]
gi\|82542906, gi\|... - gi\|82542906\|ref\|YP_406853.1\| phosphatidylglycerophosphatase A [Shigella boydii Sb227], gi\|81244317\|g...	2.0E-49	[2..161]	[9..168]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEAKRRLRL SNPWHLLATG FGSGLSPWAP GTMGSIAAIP FWLLLIQLPW QLYVLLVMFS  60
   61 ICIGIYICHR TAKDMQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.431798
Match:	PF04608.4
Description:	No description for PF04608.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHDHGSIVWD EFVGMWITLM ALPVNSWQWV VAGFIAFRIF DIWKPWPIRW FDRNIHGGTG  60
   61 IMVDDIIAGV VAAAVIFVIG HYWPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1rfzA
Description:	Structure of hypothetical protein APC35681 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits