YRC Public Data Repository - Protein Structure Prediction

Protein:	RSMH_YERPA
Organism:	Yersinia pestis Antiqua
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSMH_YERPA.

Description	E-value	Query Range	Subject Range
gi\|76177 - pir\|\|QQECFT yabC protein - Escherichia coli (strain K-12) gi\|115511492, gi... - gi\|117622368\|ref\|YP_851281.1\| S-adenosyl-methyltransferase MraW [Escherichia coli APEC O1], gi\|11551...	0.0	[8..319]	[34..345]
gi\|77977560, gi\|... - gi\|77977560\|ref\|ZP_00833005.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i...	0.0	[1..320]	[1..320]
RSMH_SHIDS - Ribosomal RNA small subunit methyltransferase H OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	0.0	[8..319]	[1..312]
gi\|238718466, gi... - gi\|77962090\|ref\|ZP_00825915.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i...	0.0	[1..320]	[1..320]
RSMH_ECO57 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O157:H7 GN=rsmH PE=3 SV=1 gi\|89106965, gi\|... - gi\|89106965\|ref\|AP_000745.1\| S-adenosyl-dependent methyltransferase activity on membrane-located sub... RSMH_ECOUT - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain UTI89 / UPEC) GN=rsmH PE... MRAW_ECOLI - S-adenosyl-L-methionine-dependent methyltransferase mraW (EC 2.1.1.-) - Escherichia coli gi\|13359542, gi\|... - gi\|15829340\|ref\|NP_308113.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. Sakai]... RSMH_ECOL5 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... RSMH_ECOHS - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O9:H4 (strain HS) GN=rsmH PE=3 S... gi\|194429383, gi... - gi\|75209397\|ref\|ZP_00709629.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|191167757, gi... - gi\|75229069\|ref\|ZP_00715649.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|192955859, gi... - gi\|75234319\|ref\|ZP_00718697.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|190905079, gi... - gi\|75235489\|ref\|ZP_00719693.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|193065897, gi... - gi\|75256046\|ref\|ZP_00727759.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|188494231, gi... - gi\|75511694\|ref\|ZP_00734332.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMH_ECOLC - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|168801509, gi... - gi\|189376342\|gb\|EDU94758.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC508],... RSMH_ECOSM - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rsmH... RSMH_ECODH - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain K12 / DH10B) GN=rsmH PE=... gi\|208727474, gi... - gi\|208807673\|ref\|ZP_03250010.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... gi\|83585196, gi\|... - gi\|83585196\|ref\|ZP_00923846.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i... gi\|195939298 - gi\|195939298\|ref\|ZP_03084680.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... RSMH_SHIB3 - Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... gi\|208741941, gi... - gi\|208821818\|ref\|ZP_03262138.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... RSMH_ECO24 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O139:H28 (strain E24377A / ETEC)... gi\|208812612, gi... - gi\|208812612\|ref\|ZP_03253941.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4... gi\|188014531, gi... - gi\|188014531\|gb\|EDU52653.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4113]... gi\|168764039, gi... - gi\|189365898\|gb\|EDU84314.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4501]... gi\|168755690, gi... - gi\|189356993\|gb\|EDU75412.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4401]... gi\|187767771, gi... - gi\|187767771\|gb\|EDU31615.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4196]... gi\|168771306, gi... - gi\|189359899\|gb\|EDU78318.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4486]... gi\|189370778, gi... - gi\|189370778\|gb\|EDU89194.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC869],... gi\|189000502, gi... - gi\|189000502\|gb\|EDU69488.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. EC4076]... EG11085 - 16S rRNA m(4)C1402 methyltransferase, SAM-dependent / 16S rRNA m(4)C1402 methyltransferase, SAM-depe... gi\|15799766, gi\|... - gi\|15799766\|ref\|NP_285778.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 EDL933], gi... EG11085 - 16S rRNA m(4)C1402 methyltransferase, SAM-dependent / 16S rRNA m(4)C1402 methyltransferase, SAM-depe... RSMH_ECOK1 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O1:K1 / APEC GN=rsmH PE=3 SV=2 RSMH_SHIBS - Ribosomal RNA small subunit methyltransferase H OS=Shigella boydii serotype 4 (strain Sb227) GN=rsmH... gi\|237704231, gi... - gi\|237704231\|ref\|ZP_04534712.1\| S-adenosyl-methyltransferase MraW [Escherichia sp. 3_2_53FAA], gi\|22... RSMH_ECOBW - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... MRAW_ECOBB - S-adenosyl-L-methionine-dependent methyltransferase mraW OS=Escherichia coli (strain B / BL21) GN=mr... RSMH_ECOBD - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain B / BL21-DE3) GN=rsmH PE... gi\|226840603, gi... - gi\|254037497\|ref\|ZP_04871574.1\| S-adenosyl-methyltransferase MraW [Escherichia sp. 1_1_43], gi\|22684... RSMH_ECOBR - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain B / REL606) GN=rsmH PE=3... gi\|254791219, gi... - gi\|254791219\|ref\|YP_003076056.1\| S-adenosyl-dependent methyltransferase activity on membrane-located... RSMH_ECOSE - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain SE11) GN=rsmH PE=3 SV=1 RSMH_ECO5E - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... RSMH_ESCF3 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia fergusonii (strain ATCC 35469 / DSM 1... gi\|217320902, gi... - gi\|217324681\|ref\|ZP_03440765.1\| S-adenosyl-methyltransferase MraW [Escherichia coli O157:H7 str. TW1... RSMH_ECO45 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=r... RSMH_ECO8A - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O8 (strain IAI1) GN=rsmH PE=3 SV... RSMH_ECOLU - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExP... RSMH_ECO55 - Ribosomal RNA small subunit methyltransferase H OS=Escherichia coli (strain 55989 / EAEC) GN=rsmH PE...	0.0	[8..319]	[1..312]
RSMH_SHISS - Ribosomal RNA small subunit methyltransferase H OS=Shigella sonnei (strain Ss046) GN=rsmH PE=3 SV=1	0.0	[8..319]	[1..312]
gi\|238786715, gi... - gi\|77976108\|ref\|ZP_00831641.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i...	0.0	[1..318]	[1..318]
gi\|30039891, gi\|... - gi\|30061649\|ref\|NP_835820.1\| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 2457T], gi... RSMH_SHIFL - Ribosomal RNA small subunit methyltransferase H OS=Shigella flexneri GN=rsmH PE=3 SV=1 gi\|24050285, gi\|... - gi\|24111527\|ref\|NP_706037.1\| S-adenosyl-methyltransferase MraW [Shigella flexneri 2a str. 301], gi\|2...	0.0	[8..319]	[1..312]
RSMH_PHOLL - Ribosomal RNA small subunit methyltransferase H OS=Photorhabdus luminescens subsp. laumondii (strain... MRAW_PHOLL - S-adenosyl-L-methionine-dependent methyltransferase mraW OS=Photorhabdus luminescens subsp. laumondi...	0.0	[7..320]	[1..314]
gi\|238714542, gi... - gi\|77958243\|ref\|ZP_00822280.1\| COG0275: Predicted S-adenosylmethionine-dependent methyltransferase i...	0.0	[1..320]	[1..320]

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Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDNNKTVDN NYKHTSVLLD EAVKGLNIRD NGIYIDGTFG RGGHSRLILS QLGPEGRLIA  60
   61 IDRDPEAIEA AKQITDPRFS IVHGPFSDLA HYVRDLDLVG RIDGILLDLG VSSPQLDDAE 120
  121 RGFSFMRDGP LDMRMDPSRG LSAAEWLMKA SADDIAWVLK TFGEERFAKR LAKAIVERNL 180
  181 TQPMTRTKEL ADLIANASPF RDKHKHPATR SFQAIRIYIN SELEEIERAL DGAHEVLAPE 240
  241 GRLSVISFHS LEDRIVKNFI RHHSRGPQVP AGLPLTEAQL RSMGGRTLKS VGKMMPGDAE 300
  301 IAENPRARSS VLRFAERIGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	1wg8A
Description:	Crystal structure of a predicted S-adenosylmethionine-dependent methyltransferase TT1512 from Thermus thermophilus HB8.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.644010137949015	bayes_pls_golite062009
methyltransferase activity	0.635463629299812	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.484303056110644	bayes_pls_golite062009
rRNA methyltransferase activity	0.431436890079007	bayes_pls_golite062009
RNA methyltransferase activity	0.390180181426808	bayes_pls_golite062009
N-methyltransferase activity	0.114147051814785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: