YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165936593, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165936593, gi....

Description	E-value	Query Range	Subject Range
gi\|32189733, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|15... gi\|21629327, gi\|... - gi\|32189733\|ref\|NP_859463.1\| hypothetical protein LMJ_0195 [Leishmania major strain Friedlin], gi\|21...	2.0E-56	[2..188]	[142..332]
gi\|186893963, gi... - gi\|186893963\|ref\|YP_001871075.1\| hypothetical protein YPTS_0634 [Yersinia pseudotuberculosis PB1/+],... Q66ET1\|Q66ET1_YERPS - Putative regulator; integral membrane protein - Yersinia pseudotuberculosis gi\|51588243, gi\|... - gi\|51594961\|ref\|YP_069152.1\| hypothetical protein YPTB0610 [Yersinia pseudotuberculosis IP 32953], g...	2.0E-56	[1..203]	[1..203]
gi\|28564914 - gi\|28564914\|gb\|AAO32541.1\| FUN34 [Saccharomyces castellii]	2.0E-52	[2..191]	[95..290]
gi\|95928934, gi\|... - gi\|95928934\|ref\|ZP_01311679.1\| GPR1/FUN34/yaaH [Desulfuromonas acetoxidans DSM 684], gi\|95134835\|gb\|...	9.0E-52	[6..185]	[89..268]
gi\|207341596 - gi\|207341596\|gb\|EDZ69605.1\| YNR002Cp-like protein [Saccharomyces cerevisiae AWRI1631] ATO2 - Putative transmembrane protein involved in export of ammonia, a starvation signal that promotes cell... gi\|190408996 - gi\|190408996\|gb\|EDV12261.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ATO2_YEAST - Ammonia transport outward protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATO2... gi\|151944531 - gi\|151944531\|gb\|EDN62809.1\| ammonia (ammonium) transport outward [Saccharomyces cerevisiae YJM789]	2.0E-51	[4..192]	[84..278]
gi\|49640141, gi\|... - gi\|50302153\|ref\|XP_451010.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640141\|emb\|CAH0259... gi\|49640141 - gi\|49640141\|emb\|CAH02598.1\| KLLA0A00242p [Kluyveromyces lactis]	2.0E-50	[2..197]	[77..276]
gi\|28564127 - gi\|28564127\|gb\|AAO32442.1\| FUN34 [Saccharomyces bayanus]	2.0E-50	[4..192]	[72..266]
gi\|14970589 - gi\|14970589\|emb\|CAA52243.2\| glyxoxylate pathway regulator [Yarrowia lipolytica]	7.0E-50	[3..189]	[74..265]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	8.0E-50	[3..189]	[74..265]

Back

Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTIKLANPG PLGLMGFGMT TVLLNLHNAG FFPLSSVILS MGIFYGGLAQ ILAGLLEYKK  60
   61 GNTFAATAFT SYGAFWLSLV GLLMLPKMGL ADATDAQFLG VYLGLWGIFT LFMFIGTLPA 120
  121 NRALQFVFGS LTILFALLAV GNFTDNHTLL MFAGFEGIIC GASAIYLAMA EVLNEQYGRT 180
  181 ILPIGEPLPI GEPSQTLETQ AVM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	90.468521
Match:	PF01184.10
Description:	No description for PF01184.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits