YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165914584, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165914584, gi....

Description	E-value	Query Range	Subject Range
gi\|17134355, gi\|... - gi\|17232708\|ref\|NP_489256.1\| hypothetical protein alr5216 [Nostoc sp. PCC 7120], gi\|17134355\|dbj\|BAB... gi\|25302934 - pir\|\|AH2457 hypothetical protein alr5216 [imported] - Nostoc sp. (strain PCC 7120)	4.0E-82	[1..436]	[4..442]
gi\|162352242, gi... - gi\|77634768\|ref\|ZP_00796862.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	4.0E-82	[1..443]	[1..443]
gi\|16763227 - gi\|16763227\|ref\|NP_458844.1\| hypothetical protein STY4766 [Salmonella enterica subsp. enterica serov... gi\|29144706, gi\|... - gi\|29144706\|ref\|NP_808048.1\| hypothetical protein t4461 [Salmonella enterica subsp. enterica serovar... gi\|161617684, gi... - gi\|161617684\|ref\|YP_001591649.1\| hypothetical protein SPAB_05547 [Salmonella enterica subsp. enteric... gi\|62182852, gi\|... - gi\|62182852\|ref\|YP_219269.1\| hypothetical protein SC4282 [Salmonella enterica subsp. enterica serova... gi\|56130457, gi\|... - gi\|56416200\|ref\|YP_153275.1\| hypothetical protein SPA4227 [Salmonella enterica subsp. enterica serov... gi\|214002811 - gi\|214002811\|ref\|ZP_03413546.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|224586249, gi... - gi\|224586249\|ref\|YP_002640048.1\| hypothetical protein SPC_4557 [Salmonella enterica subsp. enterica ... gi\|213163570 - gi\|213163570\|ref\|ZP_03349280.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|213423664 - gi\|213423664\|ref\|ZP_03356644.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|213585865 - gi\|213585865\|ref\|ZP_03367691.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|213649714 - gi\|213649714\|ref\|ZP_03379767.1\| putative transporter [Salmonella enterica subsp. enterica serovar Ty... gi\|197213826, gi... - gi\|197250123\|ref\|YP_002149321.1\| putative transporter [Salmonella enterica subsp. enterica serovar A... gi\|197262870, gi... - gi\|197262870\|ref\|ZP_03162944.1\| putative transporter [Salmonella enterica subsp. enterica serovar Sa... gi\|197365123, gi... - gi\|197365123\|ref\|YP_002144760.1\| hypothetical protein SSPA3926 [Salmonella enterica subsp. enterica ... gi\|198245725, gi... - gi\|198245725\|ref\|YP_002218289.1\| putative transporter [Salmonella enterica subsp. enterica serovar D... gi\|167991182, gi... - gi\|205330362\|gb\|EDZ17126.1\| putative transporter [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|205337049, gi... - gi\|205337049\|gb\|EDZ23813.1\| putative transporter [Salmonella enterica subsp. enterica serovar Heidel... gi\|16422969, gi\|... - gi\|16767653\|ref\|NP_463268.1\| putative hemolysin-like protein [Salmonella typhimurium LT2], gi\|164229... gi\|205342349, gi... - gi\|205342349\|gb\|EDZ29113.1\| putative transporter [Salmonella enterica subsp. enterica serovar Weltev... gi\|25302926, gi\|... - gi\|25302926\|pir\|\|AB1055 probable membrane protein ytfL [imported] - Salmonella enterica subsp. enter... gi\|194451631, gi... - gi\|194451631\|ref\|YP_002048449.1\| putative transporter [Salmonella enterica subsp. enterica serovar H... lcl\|NC_016856.1_... - [gene=ytfL] [protein=putative hemolysin-like protein] [protein_id=YP_005240724.1] [location=compleme...	1.0E-81	[1..443]	[1..446]
gi\|193063674, gi... - gi\|193063674\|ref\|ZP_03044762.1\| putative transporter [Escherichia coli E22], gi\|192930661\|gb\|EDV8326... gi\|194426533, gi... - gi\|194426533\|ref\|ZP_03059087.1\| putative transporter [Escherichia coli B171], gi\|194415272\|gb\|EDX315... gi\|187730274, gi... - gi\|187730274\|ref\|YP_001882995.1\| putative transporter [Shigella boydii CDC 3083-94], gi\|187427266\|gb... gi\|190902708, gi... - gi\|191167255\|ref\|ZP_03029073.1\| putative transporter [Escherichia coli B7A], gi\|190902708\|gb\|EDV6243... gi\|82779478, gi\|... - gi\|82779478\|ref\|YP_405827.1\| putative transport protein [Shigella dysenteriae Sd197], gi\|81243626\|gb... gi\|81247942, gi\|... - gi\|82546531\|ref\|YP_410478.1\| putative transport protein [Shigella boydii Sb227], gi\|81247942\|gb\|ABB6... gi\|73858176, gi\|... - gi\|74314699\|ref\|YP_313118.1\| putative transport protein [Shigella sonnei Ss046], gi\|73858176\|gb\|AAZ9... gi\|110617584, gi... - gi\|110808036\|ref\|YP_691556.1\| putative transport protein [Shigella flexneri 5 str. 8401], gi\|1106175... gi\|30043754, gi\|... - gi\|30065490\|ref\|NP_839661.1\| putative transport protein [Shigella flexneri 2a str. 2457T], gi\|300437... gi\|157069372, gi... - gi\|157163692\|ref\|YP_001461010.1\| putative transporter [Escherichia coli HS], gi\|157069372\|gb\|ABV0862... gi\|157079304, gi... - gi\|157157274\|ref\|YP_001465725.1\| putative transporter [Escherichia coli E24377A], gi\|157079304\|gb\|AB... gi\|24115470, gi\|... - gi\|24115470\|ref\|NP_709980.1\| putative transport protein [Shigella flexneri 2a str. 301], gi\|24054790... gi\|218697970, gi... - gi\|218697970\|ref\|YP_002405637.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|254037238, gi... - gi\|254037238\|ref\|ZP_04871315.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684034... gi\|194433889, gi... - gi\|194433889\|ref\|ZP_03066162.1\| putative transporter [Shigella dysenteriae 1012], gi\|194417870\|gb\|ED... gi\|218556770, gi... - gi\|218556770\|ref\|YP_002389684.1\| conserved hypothetical protein; putative inner membrane protein [Es...	4.0E-81	[1..441]	[1..441]
YTFL_ECOL6 - UPF0053 inner membrane protein YtfL OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) G... YTFL_ECO57 - UPF0053 inner membrane protein YtfL OS=Escherichia coli O157:H7 GN=ytfL PE=3 SV=1 gi\|227836303, gi... - gi\|227886730\|ref\|ZP_04004535.1\| hemolysin [Escherichia coli 83972], gi\|227836303\|gb\|EEJ46769.1\| hemo... EG12512 - UPF0053 family inner membrane protein / Inner membrane protein, UPF0053 family, function unknown gi\|85676969, gi\|... - gi\|89110938\|ref\|AP_004718.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|15804809, gi\|... - gi\|15804809\|ref\|NP_290850.1\| putative transport protein [Escherichia coli O157:H7 EDL933], gi\|125192... YTFL_ECOL6 - UPF0053 inner membrane protein ytfL OS=Escherichia coli O6 GN=ytfL PE=3 SV=1 gi\|251787471, gi... - gi\|251787471\|ref\|YP_003001775.1\| hypothetical protein B21_04052 [Escherichia coli BL21], gi\|24237974... gi\|238862528, gi... - gi\|238903324\|ref\|YP_002929120.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|253976052, gi... - gi\|254164151\|ref\|YP_003047259.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|253326197, gi... - gi\|254290901\|ref\|YP_003056649.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|254595639, gi... - gi\|254796239\|ref\|YP_003081076.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|188491709, gi... - gi\|188491709\|ref\|ZP_02998979.1\| putative transporter [Escherichia coli 53638], gi\|188486908\|gb\|EDU62... gi\|91213775, gi\|... - gi\|91213775\|ref\|YP_543761.1\| putative transport protein [Escherichia coli UTI89], gi\|91075349\|gb\|ABE... gi\|13364673, gi\|... - gi\|15834450\|ref\|NP_313223.1\| putative transport protein [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|170679891, gi... - gi\|170679891\|ref\|YP_001746620.1\| putative transporter [Escherichia coli SMS-3-5], gi\|170517609\|gb\|AC... gi\|170083662, gi... - gi\|170083662\|ref\|YP_001732982.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|110644583, gi... - gi\|110644583\|ref\|YP_672313.1\| hypothetical protein ECP_4471 [Escherichia coli 536], gi\|110346175\|gb\|... gi\|169756695, gi... - gi\|170021767\|ref\|YP_001726721.1\| hypothetical protein EcolC_3789 [Escherichia coli ATCC 8739], gi\|16... gi\|195937245 - gi\|195937245\|ref\|ZP_03082627.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] gi\|194437782, gi... - gi\|194437782\|ref\|ZP_03069877.1\| putative transporter [Escherichia coli 101-1], gi\|194423278\|gb\|EDX39... gi\|124528284, gi... - gi\|124528284\|ref\|ZP_01699608.1\| protein of unknown function DUF21 [Escherichia coli B], gi\|124500726... gi\|193069850, gi... - gi\|193069850\|ref\|ZP_03050800.1\| putative transporter [Escherichia coli E110019], gi\|192956904\|gb\|EDV... gi\|190908979, gi... - gi\|191170755\|ref\|ZP_03032307.1\| putative transporter [Escherichia coli F11], gi\|190908979\|gb\|EDV6856... gi\|115515692, gi... - gi\|117626568\|ref\|YP_859891.1\| putative transport protein [Escherichia coli APEC O1], gi\|115515692\|gb... gi\|168766502, gi... - gi\|189364125\|gb\|EDU82544.1\| putative transporter [Escherichia coli O157:H7 str. EC4486], gi\|16876650... gi\|189368918, gi... - gi\|189368918\|gb\|EDU87334.1\| putative transporter [Escherichia coli O157:H7 str. EC4501], gi\|16876046... gi\|168754793, gi... - gi\|189357815\|gb\|EDU76234.1\| putative transporter [Escherichia coli O157:H7 str. EC4401], gi\|16875479... gi\|168751092, gi... - gi\|188014846\|gb\|EDU52968.1\| putative transporter [Escherichia coli O157:H7 str. EC4113], gi\|16875109... gi\|168797792, gi... - gi\|189379597\|gb\|EDU98013.1\| putative transporter [Escherichia coli O157:H7 str. EC508], gi\|168797792... gi\|189374775, gi... - gi\|189374775\|gb\|EDU93191.1\| putative transporter [Escherichia coli O157:H7 str. EC869], gi\|168784860... gi\|188999763, gi... - gi\|188999763\|gb\|EDU68749.1\| putative transporter [Escherichia coli O157:H7 str. EC4076], gi\|16878273... gi\|187770191, gi... - gi\|187770191\|gb\|EDU34035.1\| putative transporter [Escherichia coli O157:H7 str. EC4196], gi\|16877406... gi\|218707831, gi... - gi\|218707831\|ref\|YP_002415350.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218372907, gi... - gi\|218702921\|ref\|YP_002410550.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218692609, gi... - gi\|218692609\|ref\|YP_002400821.1\| conserved hypothetical protein; putative inner membrane protein [Es... YTFL_ECOLI - UPF0053 inner membrane protein ytfL - Escherichia coli gi\|209400045, gi... - gi\|209400045\|ref\|YP_002273761.1\| putative transporter [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208741498, gi... - gi\|208821375\|ref\|ZP_03261695.1\| putative transporter [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208733775, gi... - gi\|208812498\|ref\|ZP_03253827.1\| putative transporter [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208809492, gi... - gi\|208809492\|ref\|ZP_03251829.1\| putative transporter [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|218561382, gi... - gi\|218561382\|ref\|YP_002394295.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|217322190, gi... - gi\|217325969\|ref\|ZP_03442053.1\| putative transporter [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|215267639, gi... - gi\|215489567\|ref\|YP_002331998.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|209914973, gi... - gi\|209921714\|ref\|YP_002295798.1\| putative transport protein [Escherichia coli SE11], gi\|209914973\|db... EG12512 - UPF0053 family inner membrane protein / Inner membrane protein, UPF0053 family, function unknown	6.0E-81	[1..441]	[1..441]
gi\|238787563, gi... - gi\|77973987\|ref\|ZP_00829530.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	7.0E-81	[1..443]	[1..443]
gi\|110595716, gi... - gi\|110595716\|ref\|ZP_01384043.1\| conserved hypothetical protein [Acidovorax sp. JS42], gi\|110334901\|g...	1.0E-80	[4..436]	[33..469]
gi\|238783546, gi... - gi\|77958761\|ref\|ZP_00822789.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers... gi\|238797582, gi... - gi\|77961280\|ref\|ZP_00825121.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	1.0E-80	[1..443]	[1..443]
gi\|77977611, gi\|... - gi\|77977611\|ref\|ZP_00833055.1\| COG1253: Hemolysins and related proteins containing CBS domains [Yers...	2.0E-80	[1..443]	[1..443]
gi\|147920421, gi... - gi\|147920421\|ref\|YP_685804.1\| hypothetical protein RCIX1155 [uncultured methanogenic archaeon RC-I],...	1.0E-79	[1..432]	[4..435]

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Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSILLILF LIAVSAFFSL SEISLAASRK IKLKLLADEG DTNALRVLKL QETPGMFFTV  60
   61 VQIGLNAVAI LGGIVGDAAF SPSFKLVFER FMAPELADQA SFVCSFVLVT SLFILFADLT 120
  121 PKRIGMISPE AVAVRIVNPM RFCLMIFRPL VWFFNGMANL IFRLFKLPMV RNDDITSDDI 180
  181 YAVVEAGALA GVLRKQEHEL IENVFELESR TVPSSMTSRE NVIYFDLRES EDSIKDKIST 240
  241 HPHSKFLVCD GHIDQVVGYV DSKDLLNRVL GNQSLVLSSG VQIRSALIVP DTLTLSEALE 300
  301 SFKTAGEDFA VILNEYALVV GIITLNDVMT TLMGDLVGQG QEEQIVARDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	2ooxG
Description:	No description for 2ooxG was found.

Predicted Domain #2

Region A:
Residues: [351-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSWLIEGGTP IEDVMRVLHI DDFPQSGNYE TIGGFMMYML RKIPKRTDFV KYAGYKFEVV  60
   61 DIDSYKIDQL LVTRLSDQPA PILPKAPHES SDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.39794
Match:	2p4pA
Description:	No description for 2p4pA was found.

Predicted functions:

Term	Confidence	Notes
magnesium ion transmembrane transporter activity	4.09048700098247	bayes_pls_golite062009
metal ion transmembrane transporter activity	3.20360029620216	bayes_pls_golite062009
ion transmembrane transporter activity	2.84728629370153	bayes_pls_golite062009
cation transmembrane transporter activity	2.83549234777732	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.62479915553705	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	2.22305253722734	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.09656284183303	bayes_pls_golite062009
transporter activity	1.41639006729672	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	1.21441469552217	bayes_pls_golite062009
transmembrane transporter activity	1.13866512878605	bayes_pls_golite062009
substrate-specific transporter activity	0.917464827903503	bayes_pls_golite062009
binding	0.57037105268889	bayes_pls_golite062009
catalytic activity	0.074501016141151	bayes_pls_golite062009
protein binding	0.0511755694922399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: