YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89102913
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89102913.

Description	E-value	Query Range	Subject Range
gi\|49237250, gi\|... - gi\|83590489\|ref\|YP_430498.1\| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC...	166.0	[0..1]	[136..1]
gi\|224586207, gi... - gi\|224586207\|ref\|YP_002640006.1\| putative negative regulator [Salmonella enterica subsp. enterica se... gi\|205360093, gi... - gi\|205360093\|ref\|ZP_02834507.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|205327229, gi... - gi\|205358148\|ref\|ZP_02576074.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|198243076, gi... - gi\|198243076\|ref\|YP_002218251.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica... gi\|197244125, gi... - gi\|197265870\|ref\|ZP_03165944.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|195873714, gi... - gi\|195873714\|ref\|ZP_02698652.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|194445441, gi... - gi\|194445441\|ref\|YP_002043622.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica... gi\|62130446, gi\|... - gi\|62182813\|ref\|YP_219230.1\| putative negative regulator [Salmonella enterica subsp. enterica serova...	163.0	[0..2]	[141..23]
gi\|227008814, gi... - gi\|227080926\|ref\|YP_002809477.1\| hypothetical protein VCM66_0705 [Vibrio cholerae M66-2], gi\|2270088... gi\|121628541, gi... - gi\|121729724\|ref\|ZP_01682165.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121628541\|g... gi\|121591450, gi... - gi\|121591450\|ref\|ZP_01678726.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215467... gi\|124120246, gi... - gi\|153220682\|ref\|ZP_01951793.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241202... gi\|153216250, gi... - gi\|153216250\|ref\|ZP_01950350.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114395\|... gi\|254843589, gi... - gi\|254847884\|ref\|ZP_05237234.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254843589\|... gi\|153800571, gi... - gi\|153800571\|ref\|ZP_01955157.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123860... gi\|153817260, gi... - gi\|153817260\|ref\|ZP_01969927.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|125622399, gi... - gi\|254225012\|ref\|ZP_04918626.1\| conserved hypothetical protein [Vibrio cholerae V51], gi\|194537786\|r... gi\|150421369, gi... - gi\|254222201\|ref\|ZP_04916074.1\| conserved hypothetical protein [Vibrio cholerae RC385], gi\|194536575... gi\|153822734, gi... - gi\|153822734\|ref\|ZP_01975401.1\| conserved hypothetical protein [Vibrio cholerae B33], gi\|126519765\|g... gi\|153829399, gi... - gi\|153829399\|ref\|ZP_01982066.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887511... gi\|153824617, gi... - gi\|153824617\|ref\|ZP_01977284.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149741835... gi\|227012571, gi... - gi\|227117121\|ref\|YP_002819017.1\| hypothetical protein VC395_0764 [Vibrio cholerae O395], gi\|22701257... gi\|15640766, gi\|... - gi\|9655192\|gb\|AAF93912.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11354549 - pir\|\|F82285 conserved hypothetical protein VC0747 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|254285465, gi... - gi\|254285465\|ref\|ZP_04960429.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197752...	163.0	[0..1]	[141..16]
NSRR_SALCH - HTH-type transcriptional repressor NsrR OS=Salmonella choleraesuis (strain SC-B67) GN=nsrR PE=3 SV=2 NSRR_SALPA - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nsr... NSRR_SALPB - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=n... NSRR_SALTY - HTH-type transcriptional repressor NsrR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... NSRR_SALG2 - HTH-type transcriptional repressor NsrR OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nsr... NSRR_SALEP - HTH-type transcriptional repressor NsrR OS=Salmonella enteritidis PT4 (strain P125109) GN=nsrR PE=3 ... lcl\|NC_016856.1_... - [gene=yjeB] [protein=transcriptional repressor NsrR] [protein_id=YP_005240680.1] [location=4623431..... gi\|200387819, gi... - gi\|200387819\|ref\|ZP_03214431.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|204927167, gi... - gi\|204927167\|ref\|ZP_03218369.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALA4 - HTH-type transcriptional repressor NsrR OS=Salmonella agona (strain SL483) GN=nsrR PE=3 SV=1 NSRR_SALPK - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A (strain AKU_12601) GN=nsrR PE=3 SV... gi\|194470152, gi... - gi\|194470152\|ref\|ZP_03076136.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALSV - HTH-type transcriptional repressor NsrR OS=Salmonella schwarzengrund (strain CVM19633) GN=nsrR PE=3 ... gi\|205348036, gi... - gi\|205348036\|gb\|EDZ34667.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... NSRR_SALHS - HTH-type transcriptional repressor NsrR OS=Salmonella heidelberg (strain SL476) GN=nsrR PE=3 SV=1 gi\|197287648, gi... - gi\|197287648\|gb\|EDY27039.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|168245155, gi... - gi\|205336063\|gb\|EDZ22827.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|205321871, gi... - gi\|205321871\|gb\|EDZ09710.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|168231405, gi... - gi\|205334382\|gb\|EDZ21146.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... NSRR_SALPA - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A GN=nsrR PE=3 SV=1 NSRR_SALCH - HTH-type transcriptional repressor nsrR OS=Salmonella choleraesuis GN=nsrR PE=3 SV=2 NSRR_SALTY - HTH-type transcriptional repressor nsrR OS=Salmonella typhimurium GN=nsrR PE=3 SV=1 NSRR_SALPB - HTH-type transcriptional repressor nsrR OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=n... NSRR_SALCH - HTH-type transcriptional repressor NsrR OS=Salmonella choleraesuis GN=nsrR PE=3 SV=2 gi\|238910525 - gi\|238910525\|ref\|ZP_04654362.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALTY - HTH-type transcriptional repressor NsrR OS=Salmonella typhimurium GN=nsrR PE=3 SV=1	162.0	[0..1]	[141..1]
gi\|77973969, gi\|... - gi\|77973969\|ref\|ZP_00829512.1\| COG1959: Predicted transcriptional regulator [Yersinia frederiksenii ...	161.0	[0..1]	[141..1]
gi\|37678938, gi\|... - gi\|37678938\|ref\|NP_933547.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37197680\|dbj\|BA...	161.0	[0..1]	[141..16]
ISCR_VIBVY - HTH-type transcriptional regulator IscR OS=Vibrio vulnificus (strain YJ016) GN=iscR PE=3 SV=2 ISCR_VIBVU - HTH-type transcriptional regulator iscR OS=Vibrio vulnificus GN=iscR PE=3 SV=1 ISCR_VIBVU - HTH-type transcriptional regulator IscR OS=Vibrio vulnificus (strain CMCP6) GN=iscR PE=3 SV=1	161.0	[0..1]	[141..1]
NSRR_SALTI - HTH-type transcriptional repressor nsrR OS=Salmonella typhi GN=nsrR PE=3 SV=1 gi\|213428666 - gi\|213428666\|ref\|ZP_03361416.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213418156 - gi\|213418156\|ref\|ZP_03351222.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213052276 - gi\|213052276\|ref\|ZP_03345154.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213981245 - gi\|213981245\|ref\|ZP_03408504.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213852964 - gi\|213852964\|ref\|ZP_03382496.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213648975 - gi\|213648975\|ref\|ZP_03379028.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|213582913 - gi\|213582913\|ref\|ZP_03364739.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALTI - HTH-type transcriptional repressor NsrR OS=Salmonella typhi GN=nsrR PE=3 SV=1 gi\|16763186 - gi\|16763186\|ref\|NP_458803.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ser... gi\|29144665, gi\|... - gi\|29144665\|ref\|NP_808007.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ser... gi\|214003354 - gi\|214003354\|ref\|ZP_03414089.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ...	161.0	[0..1]	[141..1]
gi\|22124550, gi\|... - gi\|22124550\|ref\|NP_667973.1\| hypothetical protein y0636 [Yersinia pestis KIM], gi\|21957349\|gb\|AAM842... gi\|45440389, gi\|... - gi\|45440389\|ref\|NP_991928.1\| Predicted transcriptional regulator [Yersinia pestis biovar Microtus st...	160.0	[0..2]	[141..19]
gi\|89072688, gi\|... - gi\|89072688\|ref\|ZP_01159253.1\| hypothetical transcriptional regulator [Photobacterium sp. SKA34], gi...	160.0	[0..1]	[141..13]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLTSFTDYG LRALIYMASL PDGQMTSISQ VTEVYGVSRN HMVKIINQLS RVGLVTAVRG  60
   61 KNGGIRLGKP ADQILIGDVV RQMEPLTLVN CSSDFCHITP ACRLKQVLNQ AVQSFLKELD 120
  121 NYTLADMVKD NSPLYKLLLV E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1ylfA
Description:	X-ray crystal structure of BC1842 protein from Bacillus cereus, a member of the Rrf2 family of putative transcription regulators.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits