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View Structure Prediction Details

Protein: RSMB_YERPN
Organism: Yersinia pestis Nepal516
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSMB_YERPN.

Description E-value Query
Range
Subject
Range
gi|45440098, gi|... - gi|45440098|ref|NP_991637.1| tRNA and rRNA cytosine-C5-methylase [Yersinia pestis biovar Microtus st...
1.0E-93 [1..429] [7..435]
RSMB_YERPG - Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rs...
2.0E-93 [1..429] [1..429]
RSMB_ECOL5 - Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G...
2.0E-92 [1..429] [1..429]
gi|77974958, gi|... - gi|77974958|ref|ZP_00830495.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Yersinia frederiksenii...
3.0E-92 [1..429] [1..429]
gi|77978258, gi|... - gi|77978258|ref|ZP_00833690.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Yersinia intermedia AT...
4.0E-92 [1..429] [1..429]
gi|238715991, gi... - gi|77957300|ref|ZP_00821359.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Yersinia bercovieri AT...
5.0E-92 [1..429] [1..429]
RSMB_SHISS - Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei (strain Ss046) GN=rsmB PE=3 SV=1
1.0E-91 [1..429] [1..429]
gi|15833408, gi|... - gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. Sakai], gi|...
gi|25303751 - pir||B91148 RNA methyltransferase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509...
gi|15833408, gi|... - gi|15833408|ref|NP_312181.1| RNA methyltransferase [Escherichia coli O157:H7], gi|13363627|dbj|BAB37...
1.0E-91 [1..429] [1..429]
RSMB_SHIDS - Ribosomal RNA small subunit methyltransferase B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...
1.0E-91 [1..429] [1..429]
gi|191174468, gi... - gi|75236340|ref|ZP_00720447.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Escherichia coli F11],...
1.0E-91 [1..429] [1..429]

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Predicted Domain #1
Region A:
Residues: [1-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTYNLRSI AAKAISQVLD QGQSLSAVLP ELQKNISDKD RALLQELCFG TLRVLPQLEW  60
   61 CIQQLMARPM TGKQRVFHYL IMVGLYQLIY TRIPPHAALA ETVEGATVLK RPQLKGLING 120
  121 VLRQFQRQQV ELLERAVNND SHYLHPSWLL ARIKQAYPAQ WQQILDANNQ RPPMWLRVNR 180
  181 LHHSRSEYLE LLTQADINAE PHPIYRDAVR LITPCAVNHL PGFELGWVTV QDASAQGCVD 240
  241 LLDPQNGEQI LDLCAAPGGK TTHILEAAPK AHVLAVDIDE QRLSRVKENL QRLQLQAVVR 300
  301 VGDGRAPDTW CGDQQFDRIL LDAPCSATGV IRRHPDIKWL RRDRDISELA QLQSEIIEAI 360
  361 WPKLKHGGVL VYATCSILPE ENQQQIAAFL QRHPEAQLTE TGTTAAPGKQ NLPHPEDGDG 420
  421 FFYAKIIKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.69897
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 4.15445027778357 bayes_pls_golite062009
rRNA methyltransferase activity 4.09362182773099 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.07153733729662 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.39429041855776 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
N-methyltransferase activity 3.0539218951403 bayes_pls_golite062009
protein methyltransferase activity 3.01384869242051 bayes_pls_golite062009
transferase activity 2.22303238506686 bayes_pls_golite062009
histone methyltransferase activity 1.90505369820945 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 1.83964463328968 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.75675289134467 bayes_pls_golite062009
DNA-methyltransferase activity 1.63765148226572 bayes_pls_golite062009
arginine N-methyltransferase activity 1.6030970825293 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 1.6030970825293 bayes_pls_golite062009
transcription termination factor activity 1.58162486937564 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
tRNA methyltransferase activity 1.12859857407629 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 1.10713374933008 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 1.05897361334523 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 0.703178429468566 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 0.639377525568296 bayes_pls_golite062009
O-methyltransferase activity 0.250946859465502 bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity 0.130104080746388 bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific) 0.130042730841119 bayes_pls_golite062009

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